/Bioinformatics-Rosalind

This repository is for tracking my problems solved over Rosalind. These competitive problems is related to Bioinformatics

Primary LanguageJupyter Notebook

Details


Solved includes:

From Chapter 1: File Link

Problem No Problem Name Problem Link
BA1A Compute the Number of Times a Pattern Appears in a Text problem Link
BA1B Find the Most Frequent Words in a String problem Link
BA1C Find the Reverse Complement of a String problem Link
BA1D Find All Occurrences of a Pattern in a String problem Link
BA1E Find Patterns Forming Clumps in a String problem Link
BA1F Find a Position in a Genome Minimizing the Skew problem Link
BA1G Compute the Hamming Distance Between Two Strings problem Link
BA1H Find All Approximate Occurrences of a Pattern in a String problem Link
BA1I Find the Most Frequent Words with Mismatches in a String problem Link
BA1J Find Frequent Words with Mismatches and Reverse Complements problem Link
BA1K Generate the Frequency Array of a String problem Link
BA1L Implement PatternToNumber problem Link
BA1M Implement NumberToPattern problem Link
BA1N Generate the d-Neighborhood of a String problem Link

From Chapter 2: File Link

Problem No Problem Name Problem Link
BA2A Implement MotifEnumeration problem Link
BA2B Find a Median String problem Link
BA2C Find a Profile-most Probable k-mer in a String problem Link
BA2D Implement GreedyMotifSearch problem Link
BA2E Implement GreedyMotifSearch with Pseudocounts problem Link
BA2F Implement RandomizedMotifSearch problem Link
BA2H Implement DistanceBetweenPatternAndStrings problem Link

From Chapter 3: File Link

Problem No Problem Name Problem Link
BA3A Generate the k-mer Composition of a String problem Link
BA3B Reconstruct a String from its Genome Path problem Link
BA3C Construct the Overlap Graph of a Collection of k-mers problem Link
BA3D Construct the De Bruijn Graph of a String problem Link
BA3E Construct the De Bruijn Graph of a Collection of k-mers problem Link
BA3F Find an Eulerian Cycle in a Graph problem Link
BA3G Find an Eulerian Path in a Graph problem Link
BA3H Reconstruct a String from its k-mer Composition problem Link
BA3I Find a k-Universal Circular String problem Link
BA3L Construct a String Spelled by a Gapped Genome Path problem Link

From Chapter 4: File Link

Problem No Problem Name Problem Link
BA4A Translate an RNA String into an Amino Acid String problem Link
BA4B Find Substrings of a Genome Encoding a Given Amino Acid String problem Link
BA4C Generate the Theoretical Spectrum of a Cyclic Peptide problem Link
BA4H Generate the Convolution of a Spectrum problem Link

From Chapter 9: File Link

Problem No Problem Name Problem Link
BA9G Construct the Suffix Array of a String problem Link
BA9I Construct the Burrows-Wheeler Transform of a String problem Link
BA9J Reconstruct a String from its Burrows-Wheeler Transform problem Link
BA9K Generate the Last-to-First Mapping of a String problem Link