Pinned Repositories
AllenBrainAPI
Access the Allen Brain Atlas API from MATLAB
aMAP
aMAP
ara_tools
Analysis of mouse brain STP data with respect to the Allen Reference Atlas
crabs-exploration
A toolkit for detecting and tracking crabs in the field.
lasagna
3-D imaging visualisation through slicing
masiv
MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data
NeuralPlayground
The standardised environment for the hippocampus and entorhinal cortex models
neuro
Visualisation and analysis of brain imaging data
Pyper
Motion Tracking
WAZP
Wasp Animal-tracking Zoo project with Pose estimation
SainsburyWellcomeCentre's Repositories
SainsburyWellcomeCentre/NeuralPlayground
The standardised environment for the hippocampus and entorhinal cortex models
SainsburyWellcomeCentre/lasagna
3-D imaging visualisation through slicing
SainsburyWellcomeCentre/Pyper
Motion Tracking
SainsburyWellcomeCentre/crabs-exploration
A toolkit for detecting and tracking crabs in the field.
SainsburyWellcomeCentre/aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
SainsburyWellcomeCentre/WAZP
Wasp Animal-tracking Zoo project with Pose estimation
SainsburyWellcomeCentre/microharp
A Harp protocol and device application framework micropython package.
SainsburyWellcomeCentre/aeon_acquisition
Task control and acquisition systems for Project Aeon.
SainsburyWellcomeCentre/aeon_blog
Project Aeon's "meta" repo that details the project, with a focus on dev practices and notes on technology review, challenges and insights.
SainsburyWellcomeCentre/aeon_experiments
Experiment workflows for Project Aeon
SainsburyWellcomeCentre/AnimalTrackingPipelines
SainsburyWellcomeCentre/FNT_timestamp_alignment
Pipeline for aligning harp and ephys timestamps to a single master clock.
SainsburyWellcomeCentre/rc2_matlab
SainsburyWellcomeCentre/software-skills
Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
SainsburyWellcomeCentre/swc-computing
Community driven guides to solving computational problems at SWC/GCNU
SainsburyWellcomeCentre/aeon_docs
Online docs repo for Project Aeon.
SainsburyWellcomeCentre/FNT_behavior_analysis
Pipeline for giving an overview of behavioural data from mice in the flexible navigation task.
SainsburyWellcomeCentre/glmhmm
code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs). Fork for FlexiVexi
SainsburyWellcomeCentre/looming_spots
SainsburyWellcomeCentre/micropython
MicroPython - a lean and efficient Python implementation for microcontrollers and constrained systems
SainsburyWellcomeCentre/rc2_analysis
SainsburyWellcomeCentre/aeon_analysis
Data Analysis code for Project Aeon
SainsburyWellcomeCentre/aeon_feeder
SainsburyWellcomeCentre/aeon_lineardrive
A linear stage controller for moving the position of a commutator
SainsburyWellcomeCentre/aeon_feeder_fix
SainsburyWellcomeCentre/element-array-ephys
DataJoint Element for Extracellular Array Electrophysiology - NIH U24
SainsburyWellcomeCentre/lenzietal2022_lse_figures
SainsburyWellcomeCentre/OpenSerialSection
Open Serial Section Imaging @ SWC
SainsburyWellcomeCentre/pmt_controller
SainsburyWellcomeCentre/socket-feeder
Wireless feeder controller