SaisaiSun

SaisaiSun's Stars

• facebookresearch/fairseq

  Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

  Language:Python30.5k4254.2k6.4k

• snorkel-team/snorkel

  A system for quickly generating training data with weak supervision

  Language:Python5.8k166980857

• Lightning-AI/torchmetrics

  Machine learning metrics for distributed, scalable PyTorch applications.

  Language:Python2.1k33883408

• openbabel/openbabel

  Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

  Language:C++1.1k701.9k416

• weizhongli/cdhit

  Automatically exported from code.google.com/p/cdhit

  Language:Perl64128133129

• dddzg/up-detr

  [TPAMI 2022 & CVPR2021 Oral] UP-DETR: Unsupervised Pre-training for Object Detection with Transformers

  Language:Python477133271

• 3dem/model-angelo

  Automatic atomic model building program for cryo-EM maps

  Language:Python12088718

• jertubiana/ScanNet

  Language:Python11841329

• mittinatten/freesasa

  C-library for calculating Solvent Accessible Surface Areas

  Language:C113107736

• patrickfuller/imolecule

  An embeddable webGL molecule viewer and file format converter.

  Language:JavaScript8572118

• lbcb-sci/RiNALMo

  RiboNucleic Acid (RNA) Language Model

  Language:Python7241310

• piercelab/antibody_benchmark

  Antibody-Antigen Docking and Affinity Benchmark

  Language:Perl663212

• freesasa/freesasa-python

  FreeSASA Python Module

  Language:Cython4822912

• marcellszi/rna3db

  A dataset for training and benchmarking deep learning models for RNA structure prediction

  Language:Python43396

• enai4bio/DeepAAI

  DeepAAI

  Language:Python29143

• automl/RNAformer

  Scalable Deep Learning for RNA Secondary Structure Prediction

  Language:Python28739

• khanhlee/bert-enhancer

  A Transformer Architecture Based on BERT and 2D Convolutional Neural Network to Identify DNA Enhancers from Sequence Information

  Language:Python2421213

• Bruce-ywj/ERNIE-RNA

  Code of a structure-enhanced RNA language model named ERNIE-RNA

  Language:Python12244

• stau-7001/S3AI

  Language:Python10211

• cgoliver/rnamigos2

  Rapid structure-based virtual screening for RNA targets.

  Language:Python9232

• kthrn22/Predict-Binding-Affinity-using-GNN

  Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and based on the method in "Predicting drug-target interaction using 3D structure-embedded graph representations from graph neural networks"

  Language:Python9200

• Wenjian-Ma/CollaPPI

  Language:Python40

• EABogdanova/ProBAN

  Language:Jupyter Notebook321

• fengshikun/BindNet

  Language:Python30

• NimishaGhosh/DNABERT-Cap

  Repository of the paper "Predicting Transcription Factor Binding Sites using Transformer based Capsule Network"

  Language:Python320

• sethzhangjs/MucLiPred

  MucLiPred is a deep learning model for predicting binding residues in proteins.

  Language:Python3100

• devalab/TorRNA

  Improved prediction of Torsion angles of RNA by leveraging large language models

  Language:Jupyter Notebook2000

• HarveyYan/RSSMFold

  Language:Python2200

• lennylv/MultiModRLBP

  Language:Python2111

• ChunhuaLab/PepPAP

  Language:Python1