SaitamaWick98

SaitamaWick98's Stars

• dbespiatykh/RDscan

  A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples

  Language:Python61

• rrwick/Unicycler

  hybrid assembly pipeline for bacterial genomes

  Language:C++587135

• rpetit3/fastq-dl

  Download FASTQ files from SRA or ENA repositories.

  Language:Python31025

• openai/openai-cookbook

  Examples and guides for using the OpenAI API

  Language:MDX62.5k10.1k

• vinuesa/intro2linux

  Taller de introducción al biocómputo en sistemas UNIX y GNU/Linux

  Language:HTML216

• JanDeDobbeleer/oh-my-posh

  The most customisable and low-latency cross platform/shell prompt renderer

  Language:Go18.6k2.5k

• ohmyzsh/ohmyzsh

  🙃 A delightful community-driven (with 2,400+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool that makes it easy to keep up with the latest updates from the community.

  Language:Shell177k26k

• phuctm97/shell.how

  Explain shell commands using next-generation autocomplete Fig.

  Language:TypeScript2778

• natayadev/dataengineering-roadmap

  Un repositorio más con conceptos básicos, desafíos técnicos y recursos sobre ingeniería de datos en español 🧙✨

  70668

• pianistandcats/gravitational-model

  Una simulación de la gravedad en Python

  Language:Python62

• CPTR-ReSeqTB/UVP

  Mycobacterium tuberculosis next generation sequence analysis

  Language:Python2412

• NVIDIA-Genomics-Research/GenomeWorks

  SDK for GPU accelerated genome assembly and analysis

  Language:Cuda29076

• google/nucleus

  Python and C++ code for reading and writing genomics data.

  Language:C++787124

• SSID08/TB-ML

  Code and supplementary files for paper 'Application of machine learning algorithms to genome-wide variants of Mycobacterium tuberculosis informs on drug-resistant tuberculosis'

  Language:Python3

• jwohlwend/boltz

  Official repository for the Boltz-1 biomolecular interaction model

  Language:Python1.7k235

• BioJulia/BioAlignments.jl

  Sequence alignment tools

  Language:Julia6224

• malonge/RagTag

  Tools for fast and flexible genome assembly scaffolding and improvement

  Language:Python49949

• PacktPublishing/Bioinformatics-with-Python-Cookbook-third-edition

  Bioinformatics with Python Cookbook, Third Edition

  Language:Python16672

• RosettaCommons/rosetta

  The Rosetta Bio-macromolecule modeling package.

  Language:C++23778

• tseemann/snippy

  :scissors: :zap: Rapid haploid variant calling and core genome alignment

  Language:Perl503117

• ollama/ollama

  Get up and running with Llama 3.3, DeepSeek-R1, Phi-4, Gemma 3, and other large language models.

  Language:Go135k11.2k

• ngs-fzb/MTBseq_source

  MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

  Language:Perl4423

• id-Software/DOOM

  DOOM Open Source Release

  Language:C++15.4k2.6k

• Nayeli-Luis/Minicurso_Python

  Minicurso de Fundamentos de programación con Python

  Language:Jupyter Notebook11

• aandrew-me/tgpt

  AI Chatbots in terminal without needing API keys

  Language:Go2.4k220

• a-r-j/graphein

  Protein Graph Library

  Language:Jupyter Notebook1.1k133

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.3k614

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++2k337

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2.2k532

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.4k630