Pinned Repositories
CFS-Seq
Analysis of Repli-Seq data under replication stress to map common fragile sites (CFSs) : From count matrices to SDR (significantly delayed region) identification.
RepliSeq
R package for the analysis of Repli-Seq data to study DNA replication timing program: From count matrices, data normalization to replication timing calculation.
Aiptasia_data
Bashscript_canvas
Create the skeleton of a new bash script with arguments in one command line
GenomicUtils
A collection of custom-made bash scripts to make my Genomics data analyses easily reproducible
macrosyntApp
Shiny app to draw Oxford grids using the macrosyntR R package
macrosyntR
R package for comparison of synteny conservation at the genome-wide scale.
OF_to_macrosyntR
Shell script to post-process OrthoFinder's output into pairwise tables used in macrosyntR
rbhXpress
A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.
ReciprocalBestApp
Shiny app to compute orthologs as reciprocal best hits using rbhXpress
SamiLhll's Repositories
SamiLhll/macrosyntR
R package for comparison of synteny conservation at the genome-wide scale.
SamiLhll/rbhXpress
A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.
SamiLhll/GenomicUtils
A collection of custom-made bash scripts to make my Genomics data analyses easily reproducible
SamiLhll/Aiptasia_data
SamiLhll/Bashscript_canvas
Create the skeleton of a new bash script with arguments in one command line
SamiLhll/macrosyntApp
Shiny app to draw Oxford grids using the macrosyntR R package
SamiLhll/OF_to_macrosyntR
Shell script to post-process OrthoFinder's output into pairwise tables used in macrosyntR
SamiLhll/ReciprocalBestApp
Shiny app to compute orthologs as reciprocal best hits using rbhXpress
SamiLhll/RepliSeq
Process Repli-Seq data in R to analyze DNA replication timing.