SamiLhll

CFS-Seq

Analysis of Repli-Seq data under replication stress to map common fragile sites (CFSs) : From count matrices to SDR (significantly delayed region) identification.

RepliSeq

R package for the analysis of Repli-Seq data to study DNA replication timing program: From count matrices, data normalization to replication timing calculation.

Aiptasia_data

Bashscript_canvas

Create the skeleton of a new bash script with arguments in one command line

GenomicUtils

A collection of custom-made bash scripts to make my Genomics data analyses easily reproducible

macrosyntApp

Shiny app to draw Oxford grids using the macrosyntR R package

macrosyntR

R package for comparison of synteny conservation at the genome-wide scale.

OF_to_macrosyntR

Shell script to post-process OrthoFinder's output into pairwise tables used in macrosyntR

rbhXpress

A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.

ReciprocalBestApp

Shiny app to compute orthologs as reciprocal best hits using rbhXpress

SamiLhll/macrosyntR

R package for comparison of synteny conservation at the genome-wide scale.

SamiLhll/rbhXpress

A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.

SamiLhll/GenomicUtils

A collection of custom-made bash scripts to make my Genomics data analyses easily reproducible

SamiLhll/Aiptasia_data

SamiLhll/Bashscript_canvas

Create the skeleton of a new bash script with arguments in one command line

SamiLhll/macrosyntApp

Shiny app to draw Oxford grids using the macrosyntR R package

SamiLhll/OF_to_macrosyntR

Shell script to post-process OrthoFinder's output into pairwise tables used in macrosyntR

SamiLhll/ReciprocalBestApp

Shiny app to compute orthologs as reciprocal best hits using rbhXpress

SamiLhll/RepliSeq

Process Repli-Seq data in R to analyze DNA replication timing.