SammedMandape
Bioinformatician | Computational Biologist
Center for Human Identification, UNTHSCForth Worth, TX
Pinned Repositories
1000G_vcf
1000 genomes variant analyses
AncestrySTR
denseSNP_dev
deseq2_heatmap
DEseq2 analysis and plotting heatmap for RNAseq and RPPA
dstk_geocoding_data_retrieval
Genomic-Data-Commons-TCGA-data-merge
mitomix_UI
R shiny interface for MMDIT project
MMDIT_UI
Rshiny interface for mitochondrial DNA mixture analysis and interpretation
Rshinyapp
R shiny interface for information retrieval from public repo (NCBI)
UMI
Unique Molecular Identifiers (UMIs) for better signal processing and reducing noise (stutter) in MPS data with applications in forensics.
SammedMandape's Repositories
SammedMandape/Genomic-Data-Commons-TCGA-data-merge
SammedMandape/mitomix_UI
R shiny interface for MMDIT project
SammedMandape/MMDIT_UI
Rshiny interface for mitochondrial DNA mixture analysis and interpretation
SammedMandape/UMI
Unique Molecular Identifiers (UMIs) for better signal processing and reducing noise (stutter) in MPS data with applications in forensics.
SammedMandape/1000G_vcf
1000 genomes variant analyses
SammedMandape/AncestrySTR
SammedMandape/denseSNP_dev
SammedMandape/deseq2_heatmap
DEseq2 analysis and plotting heatmap for RNAseq and RPPA
SammedMandape/dstk_geocoding_data_retrieval
SammedMandape/FASTA_ID_conversion
SammedMandape/Microbiome_data_analysis_pipeline_scripts
Microbiome data analysis using QIIME - Documentation of scripts
SammedMandape/Rshinyapp
R shiny interface for information retrieval from public repo (NCBI)
SammedMandape/glimpse_snakemake_hg38
SammedMandape/Mito_dev
Mitochondrial population snps data analysis
SammedMandape/NIST
Work at NIST: snakemake workflow to get short tandem repeats from WGS GIAB samples. R script for downstream processing and concordance
SammedMandape/Parse_pubmed_authors
SammedMandape/parse_XML_python
SammedMandape/ped-sim
Pedigree simulator
SammedMandape/pheatmap
R code to plot heatmap: T-cell acute lymphoblastic (T-ALL) project
SammedMandape/rcpcr
SammedMandape/shell_scripts_HLA
SammedMandape/shinyAppTutorials
a collection of shiny app demonstrations :bar_chart:
SammedMandape/skater
SKATE R Utilities
SammedMandape/snakemake_fastq2variant
Snakemake workflow to call variants from Illumina WGS data
SammedMandape/UMI-dev
UMI-development scripts
SammedMandape/Unix_cmds
Unix one liners - Basic cmds used for A. bau project