SampurnaM
Ex-Predoctoral Fellow at EMBL-EBI | Lucy Cavendish College, University of Cambrige. Enthusiastic learner : Key focus: molecular modelling, immunology, AI/ML
Pinned Repositories
alexia-education.github.io
biobb
Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools.
bioinformher_SM
BondPack
A collection of PyMOL plugins to visualize atomic bonds.
Bulk_RNAseq_Course_Apr22
EMBL_BTM_2019
Code for the BTM course 2019
mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics simulations.
MPhil_HLA_Ab
Code used for analysis of HLA-Ab crystal structures for MPhil by thesis of Sampurna Mukherjee
R_for_infectious_disease
Exercises on using RStudio for infectious disease modelling
scikit_learn_mooc_15_11_24
Notebooks from scikit-learn MOOC
SampurnaM's Repositories
SampurnaM/mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics simulations.
SampurnaM/R_for_infectious_disease
Exercises on using RStudio for infectious disease modelling
SampurnaM/alexia-education.github.io
SampurnaM/biobb
Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools.
SampurnaM/bioinformher_SM
SampurnaM/BondPack
A collection of PyMOL plugins to visualize atomic bonds.
SampurnaM/Bulk_RNAseq_Course_Apr22
SampurnaM/EMBL_BTM_2019
Code for the BTM course 2019
SampurnaM/genomics_learning_SM
A compilation of code and data I used from freely available materials to brush up my genomics/transcriptomics analysis skills
SampurnaM/MPhil_HLA_Ab
Code used for analysis of HLA-Ab crystal structures for MPhil by thesis of Sampurna Mukherjee
SampurnaM/r_for_data_science_exercises
Exercises from the book R for data science : https://r4ds.hadley.nz/
SampurnaM/scikit_learn_mooc_15_11_24
Notebooks from scikit-learn MOOC
SampurnaM/git_learn_13_7_22
Brushing up github basics from SW Carpentry
SampurnaM/HADDOCK-antibody-antigen
Material to run the HADDOCK antibody-antigen modelling protocol
SampurnaM/hello_world
Just beginner stuff.
SampurnaM/NGS-introduction-training
SIB course that introduces analysis of NGS data
SampurnaM/progbio
Teaching materials for classes teaching programming to biologists
SampurnaM/python-basic
Python3 teaching materials for basic introduction to Python (2 days)
SampurnaM/python-data-science
Python3 teaching materials for data science (2 days)
SampurnaM/scrnaseq_python_2023
Materials for the EBI course "Single-cell RNA-seq analysis using Python 2023"
SampurnaM/sq2
Repository for code used in the PLOS Genetics paper on HLA variation
SampurnaM/wim_interfaces