SamuelBrand1
A contracted analyst for CFA/CDC. Formerly a PDRA at Zeeman Institute for Systems Biology and Infectious Disease Epidemiological Research (SBIDER).
Centre for Forecasting and Outbreak Analytics (CDC/CFA)London, United Kingdom
Pinned Repositories
ApproxBayes.jl
Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia
BenchmarkCI.jl
BTV-European-Reproductive-Ratios
MATLAB® code for creating daily reproductive ratios for BTV across Europe.
Climatic-Reproductive-Ratio-VBD
Code for introducing climate time series into climatic R calculations.
kenya-covid-three-waves
Model supporting "COVID-19 Transmission Dynamics Underlying Epidemic Waves in Kenya"
KenyaCoV
This repo contains the source code KenyaCoV, a simulation package for forecasting SARS-CoV-2 transmission in Kenya.
KenyaCoVaccines
Vaccine modelling
MonkeypoxUK
Some code for monkeypox
MpoxUK
Modelling Mpox transmission in the United Kingdom.
SamuelBrand1's Repositories
SamuelBrand1/MonkeypoxUK
Some code for monkeypox
SamuelBrand1/kenya-covid-three-waves
Model supporting "COVID-19 Transmission Dynamics Underlying Epidemic Waves in Kenya"
SamuelBrand1/KenyaCoV
This repo contains the source code KenyaCoV, a simulation package for forecasting SARS-CoV-2 transmission in Kenya.
SamuelBrand1/MpoxUK
Modelling Mpox transmission in the United Kingdom.
SamuelBrand1/KenyaCoVaccines
Vaccine modelling
SamuelBrand1/ApproxBayes.jl
Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia
SamuelBrand1/BenchmarkCI.jl
SamuelBrand1/BTV-European-Reproductive-Ratios
MATLAB® code for creating daily reproductive ratios for BTV across Europe.
SamuelBrand1/Climatic-Reproductive-Ratio-VBD
Code for introducing climate time series into climatic R calculations.
SamuelBrand1/covid-19-in-households-public
SamuelBrand1/covid-policy-tracker
Systematic dataset of Covid-19 policy, from Oxford University
SamuelBrand1/covideventdistributions
SamuelBrand1/ebola_MCMC
Direct MCMC methods for Ebola
SamuelBrand1/epi-examples-julia
Epi model examples in Julia
SamuelBrand1/FluSight-forecast-hub
SamuelBrand1/fun-games
A repo for playing around with game development
SamuelBrand1/Gen.jl
A general-purpose probabilistic programming system with programmable inference
SamuelBrand1/GpABC.jl
A fork of GpABC to try improving compatibility
SamuelBrand1/measles-model-chicago-2024
Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Illinois, 2024", MMWR (2024)
SamuelBrand1/MpxInc_2022
Incubation period for mokeypox
SamuelBrand1/MSML21_BayesianNODE
SamuelBrand1/ReproductiveRatioVBD
Reproductive ratio
SamuelBrand1/resources
Resources mostly related to statistics, computing in R, and research processes
SamuelBrand1/RSV-transmission-model
Transmission model to evaluate the impact of RSV in England
SamuelBrand1/RSV_serology
SamuelBrand1/RSVHouseholdModel
Julia 0.6 code for running the RSV Household transmission model (see https://www.biorxiv.org/content/10.1101/569335v1.abstract for preprint).
SamuelBrand1/sampling_rt_vs_Rt
Sampling growth rates vs Rt
SamuelBrand1/StateSpaceModels.jl
StateSpaceModels.jl is a Julia package for time-series analysis using state-space models.
SamuelBrand1/UK-BTV-Model
C++ code to run a model simulating BTV spread between farms using climate data from 2007.
SamuelBrand1/universal_differential_equations
Repository for the Universal Differential Equations for Scientific Machine Learning paper, describing a computational basis for high performance SciML