SamueleSoraggi
Data Scientist at Aarhus University. Statistician, bioinformatician and developer. Languages: Python|R|Bash|SQL Tools: Docker|dash|pymc|scanpy
Aarhus UniversityAarhus, Denmark
Pinned Repositories
NGS_summer_course_Aarhus
Repository for the NGS summer course at Aarhus university
angsd
Program for analysing NGS data.
bayesian_statistics
Notes, slides and exercises from bayesian statistics readings
course-template
A course template for courses
Dash-tutorials
Incrementally difficult dash apps to learn some interactive plots
docker-scanpy
Docker for scRNA-seq analysis in python
Docker_for_reproducibility
DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
HMMploidy
A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
single-cell-standardized-pipeline
SamueleSoraggi's Repositories
SamueleSoraggi/HMMploidy
A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
SamueleSoraggi/single-cell-standardized-pipeline
SamueleSoraggi/angsd
Program for analysing NGS data.
SamueleSoraggi/bayesian_statistics
Notes, slides and exercises from bayesian statistics readings
SamueleSoraggi/course-template
A course template for courses
SamueleSoraggi/Dash-tutorials
Incrementally difficult dash apps to learn some interactive plots
SamueleSoraggi/docker-scanpy
Docker for scRNA-seq analysis in python
SamueleSoraggi/Docker_for_reproducibility
SamueleSoraggi/DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
SamueleSoraggi/HMM-matlab
SamueleSoraggi/introtodeeplearning_2024
2024 edition MIT 6.S191 for self study
SamueleSoraggi/launch-dash-with-docker
Two small example to make a dash interactive interface work with either gunicorn or jupyterlab
SamueleSoraggi/MBG-AU-computational-biology-2023
example course repository to test
SamueleSoraggi/MBG-AU-data-analysis-2023
example course repository to test
SamueleSoraggi/MBG-course-template
course template
SamueleSoraggi/Projection_and_clustering_tutorial
SamueleSoraggi/pymc-quap
Quadratic Approximation for PyMC
SamueleSoraggi/robustbase
A Python Based Library to Calculate Statistical Estimators
SamueleSoraggi/SamueleSoraggi.github.io
professional webpage
SamueleSoraggi/scsm
single cell single molecule course exercise material and webpage
SamueleSoraggi/transcriptomics_app_ucloud
Development of the transcriptomics app based on Rstudio for UCloud
SamueleSoraggi/useful-scripts
Scripts I have found really useful when working. Various programming languages.