SantosJGND
Demographic modelling. PhD in rice population genomic analysis, France. MsC in Evolutionary and Developmental Biology, University of Lisbon.
INSALisbon, US
Pinned Repositories
algn2pheno
A bioinformatics tool for rapid screening of genetic features (nt or aa changes) potentially linked to specific phenotypes
Classes_git
Class_homework_upload.
Coalescent
coalescent theory, work and play
Galaxy_KDE_classifier
Pipeline for the classification and exploration of local genomic variation.
INSaFLU
INSaFLU (“INSide the FLU”) is an influenza-oriented bioinformatics free web-based suite
Nlas
Kinship structure of a temperate bat maternity colony
Research_Log
Personal Research / Coding Journal.
TELEVIR
A pipeline that uses a combination of tools to identify viral sequences in metagenomic data.
Tools
Tools of day to day use
Tools_and_toys
Products for genomic and genetic analysis.
SantosJGND's Repositories
SantosJGND/Galaxy_KDE_classifier
Pipeline for the classification and exploration of local genomic variation.
SantosJGND/Nlas
Kinship structure of a temperate bat maternity colony
SantosJGND/TELEVIR
A pipeline that uses a combination of tools to identify viral sequences in metagenomic data.
SantosJGND/Tools_and_toys
Products for genomic and genetic analysis.
SantosJGND/algn2pheno
A bioinformatics tool for rapid screening of genetic features (nt or aa changes) potentially linked to specific phenotypes
SantosJGND/Coalescent
coalescent theory, work and play
SantosJGND/Imputation
VCF, dimensionality reduction, distances, KDE
SantosJGND/INSaFLU
INSaFLU (“INSide the FLU”) is an influenza-oriented bioinformatics free web-based suite
SantosJGND/SI_NOTEBOOKS
Statistical Inference Class Notebooks
SantosJGND/Research_Log
Personal Research / Coding Journal.
SantosJGND/Tools
Tools of day to day use
SantosJGND/docker
local_branch-insaflu-docker
SantosJGND/docker-1
Easy installation for INSaFLU made by docker
SantosJGND/efsa_parser
parse output of efsa pipeline to compound excel sheet.
SantosJGND/entrez_direct
entrez_direct_app
SantosJGND/fastq-split
a simple script to subset fastq files in a predictable and pair-end friendly way
SantosJGND/filemanager
SantosJGND/Heroku
App_deployment
SantosJGND/Ideogram_vis
SantosJGND/insaflu_upload
Insaflu - Minion - output collection and automatic upload to Insaflu / analysis
SantosJGND/KAUST
work at KAUST
SantosJGND/Membranes
Extracting membrane positions from microscope photography
SantosJGND/metagen
django_metagenomics_website_toy
SantosJGND/metagen_merge
app for merging metagen reports
SantosJGND/Models
Coordinating local genomic analyses.
SantosJGND/MScount
pipeline for the study of mutation spectrum sampling variance under specific demographic scenarios.
SantosJGND/Remap
SantosJGND/santosjgnd.github.io
SantosJGND/televir_benchmark_eda
exploratory analysis of metagenomics workflow benchmark
SantosJGND/Tools_II
everyday things that might be useful.