/bioinf-workflows

This repository has bioinformatics workflows written with Nextflow.

Primary LanguageNextflow

Bioinformatics Workflows

Trim, annotate, assemble workflow

Steps in the workflow

Example install and run

git clone git@github.com:SarahNadeau/bioinf-workflows.git
cd bioinf-workflows
nextflow run -profile docker main.nf --outpath OUTPATH_DIR --inpath INPUT_DIR