/sib-variant-analysis

Primary LanguageShell

This project is from the SIB workshop "NGS - Variant analysis".

data directory would contain data files provided by the workshop. See workshop webpage.

scripts directory contains code written during the workshop.

  • scripts/bash/alignment/make_alignments.sh generates alignments from FASTQ files.
  • scripts/bash/variant_calling/call_variants.sh calls variants from alignment files.