Pinned Repositories
Causal-Inference-and-Discovery-in-Python
Causal Inference and Discovery in Python by Packt Publishing
figeno
Tool for plotting sequencing data along genomic coordinates.
genemania
GeneMANIA helps you predict the function of your favourite genes and gene sets.
GMX_MMPB-GBSA
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
gpn
Genomic Pre-trained Network
machine-learning-specialization-andrew-ng
A collection of notes and implementations of machine learning algorithms from Andrew Ng's machine learning specialization.
Online_R_learning
Online R learning for applied statistics
QuickDA
Simple & Easy-to-use python modules to perform Quick Exploratory Data Analysis for any structured dataset!
TCGA_analysis
XAI-for-bioinformatics
Explainable AI for Bioinformatics
Sarkaft's Repositories
Sarkaft/figeno
Tool for plotting sequencing data along genomic coordinates.
Sarkaft/GMX_MMPB-GBSA
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
Sarkaft/500-AI-Machine-learning-Deep-learning-Computer-vision-NLP-Projects-with-code
500 AI Machine learning Deep learning Computer vision NLP Projects with code
Sarkaft/app-ideas
A Collection of application ideas which can be used to improve your coding skills.
Sarkaft/awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
Sarkaft/bionumpy
Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
Sarkaft/Biostatistics-with-Python
Biostatistics with Python, published by Packt
Sarkaft/Breast-Cancer-Detection
Sarkaft/cancer-variants-training
Sarkaft/coding-interview-university
A complete computer science study plan to become a software engineer.
Sarkaft/CopilotKit
A framework for building custom AI Copilots 🤖 in-app AI chatbots, in-app AI Agents, & AI-powered Textareas.
Sarkaft/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Sarkaft/developer-roadmap
Interactive roadmaps, guides and other educational content to help developers grow in their careers.
Sarkaft/DevToys
A Swiss Army knife for developers.
Sarkaft/free-programming-books
:books: Freely available programming books
Sarkaft/glittr
A web application for finding and comparing bioinformatics training materials on GitHub and GitLab
Sarkaft/Graduation_projects-idea
Sarkaft/GWalkR
Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.
Sarkaft/Learn_Bioinformatics
Sarkaft/Machine-Learning-Projects
This repository contains mini projects in machine learning with notebook files
Sarkaft/mettannotator
Sarkaft/NLP-progress
Repository to track the progress in Natural Language Processing (NLP), including the datasets and the current state-of-the-art for the most common NLP tasks.
Sarkaft/PDAC-PathAI-MolecularClassifier
Sarkaft/project-based-learning
Curated list of project-based tutorials
Sarkaft/Prokaryome
WDL-based tool designed to streamline microbiome data processing for assembling, polishing, annotating, and visualizing prokaryotic genomes. It simplifies the analysis process from raw sequencing reads to high-quality annotated genomes
Sarkaft/Protein-Design-and-Drug-Discovery-Research-Assistant
Sarkaft/r-best-practice
A cheatsheet for basic best practice in R programming
Sarkaft/recommenders
Best Practices on Recommendation Systems
Sarkaft/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Sarkaft/VirtuDockDL