PhD thesis

This repo contains source files for my PhD thesis titled, "Visualization and analysis of probability distributions of large temporal data", at Monash University.

Summary

Clone with `git-lfs`

Since this repo contains two large data files (>= 50MB), you need to first download and install a git plugin called git-lfs for versioning large files, and set up Git LFS using command git lfs install in console, in order to fully clone this repo.

Reproducibility

The environment and R packages used to construct this thesis can be recovered using the renv package. Run the following code to install the packages used in this thesis:

# install.packages("renv")
renv::restore()

The thesis can be compiled into both html and pdf format as follows:

# uncomment if cache isn't setup
# make hub
# make bfcbam
# make bfcsnp
make both

Directories

Rmd/: R Markdown source documents for thesis document.
scripts/: R code to reproduce tables, figures and analysis.
data/: Cleaned data used for thesis document.
data-raw/: R code to generate data in data/.
img/: Images made with other tools to illustrate ideas.
bib/: Bibliography files.
template/: Monash thesis template from robjhydman/MonashThesis.

License

This work is licensed under a . The code contained in this work is available under the MIT license.

Acknowledgements

Thank you for creating this excellent reproducible thesis template, Earo Wang.

Sayani07/thesis-1