Pinned Repositories
Agonal-factors-project
codes for my project
ASD-Integration-Subtypes-Manuscript
atac_seq
atac_seq pipeline
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
chiasm
Detection and Quantification of circRNAs in Transcriptome Data, case Study on Honeybees
CIRCexplorer2
circular RNA analysis toolset
circular-RNA-learning
ciri-as
Docker to run CIRI-AS for splicing quantification of circular RNA
CLEAR
direct comparison of circular and linear RNA expression
csuWGCNA
Scathacheng's Repositories
Scathacheng/circular-RNA-learning
Scathacheng/Agonal-factors-project
codes for my project
Scathacheng/ASD-Integration-Subtypes-Manuscript
Scathacheng/atac_seq
atac_seq pipeline
Scathacheng/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Scathacheng/chiasm
Detection and Quantification of circRNAs in Transcriptome Data, case Study on Honeybees
Scathacheng/CIRCexplorer2
circular RNA analysis toolset
Scathacheng/ciri-as
Docker to run CIRI-AS for splicing quantification of circular RNA
Scathacheng/CLEAR
direct comparison of circular and linear RNA expression
Scathacheng/csuWGCNA
Scathacheng/DCC
DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
Scathacheng/differential-expression-analysis
Scathacheng/DRAMS
A tool to Detect and Re-Align Mixed-up Samples based on multi-omics data
Scathacheng/dynbenchmark
Comparison of methods for trajectory inference on single-cell data 🥇
Scathacheng/ECatlas
Scathacheng/English-level-up-tips-for-Chinese
可能是让你受益匪浅的英语进阶指南
Scathacheng/ESCCatlas
Multi-region Single-cell atlas of Esophageal Squamous Cell Carcinoma
Scathacheng/FAtools
R package for factor analysis visualization
Scathacheng/GO_MWU
Rank-based Gene Ontology analysis of gene expression data
Scathacheng/holoflow
Bioinformatics pipeline for hologenomics data generation and analysis
Scathacheng/liger
R package for integrating and analyzing multiple single-cell datasets
Scathacheng/MapSplice
Bioinformatics software release from Jinze Liu's Bioinformatics lab @ UKy
Scathacheng/population-compare-pipeline
Analysis pipelines for QTL discovery and GWAS signals interpretation
Scathacheng/scater
Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.
Scathacheng/scRNA-seq-analysis
use SingleCellExperiment and Scater packages to analysis single cell RNA sequencing data
Scathacheng/Shared-molecular-neuropathology-across-major-psychiatric-disorders-parallels-polygenic-overlap
Scathacheng/Single-cell-analysis
Scathacheng/ssstudy
Scathacheng/tSNEplots
An R script for automatically creating coloured tSNE plots
Scathacheng/unknown-factors-analysis
analysis tried to find undefined factors