loose fusions rule error
f0t1h opened this issue · 1 comments
f0t1h commented
I am getting the following error when running fusion snakemake.
rule loose_fusions:
input: fusiontmp/exactparsematrix_sim21_22_Homo-sapiens-GRCh38-cdna-all_GRCh38-97.txt
output: fusiontmp/loose_gene_fusion_sim21_22_Homo-sapiens-GRCh38-cdna-all_GRCh38-97.txt
jobid: 12
wildcards: reads=sim21_22, transcripts=Homo-sapiens-GRCh38-cdna-all, graph=GRCh38-97
AeronScripts/pairmatrix_get_genes.py < fusiontmp/exactparsematrix_sim21_22_Homo-sapiens-GRCh38-cdna-all_GRCh38-97.txt > fusiontmp/loose_getxt
Traceback (most recent call last):
File "AeronScripts/pairmatrix_get_genes.py", line 13, in <module>
lgene = generegex.search(parts[0]).group(1)
AttributeError: 'NoneType' object has no attribute 'group'
MikaQiao commented
I ran into the same error, does anyone have a solution?