Pinned Repositories
Aeron
Alignment, quantification and fusion prediction from long RNA reads
EpigenomeAnalysisTutorial-2020
This website contains material for an epigenome analysis tutorial that covers ATAC-seq analysis and integration with TF motifs and gene expression
EpigenomicsTutorial-ISMB2017
Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
KREATION
automated k-mer range estimation for de novo transcriptome assembly
ORNA
Fast in-silico normalization algorithm for NGS data
RAPID
RAPID is a set of tools for the alignment, and analysis of genomic regions with small RNA clusters derived from small RNA sequencing data.
SNEEP
SNp Exploration and Analysis using EPigenomics data
STARE
TF analysis from epigenetic and Hi-C data
STITCHIT
Learning gene-specific regulatory elements from epigenetic data
TEPIC
Annotation of genomic regions using transcription factor binding sites and epigenetic data
SchulzLab's Repositories
SchulzLab/TEPIC
Annotation of genomic regions using transcription factor binding sites and epigenetic data
SchulzLab/ORNA
Fast in-silico normalization algorithm for NGS data
SchulzLab/STARE
TF analysis from epigenetic and Hi-C data
SchulzLab/EpigenomicsTutorial-ISMB2017
Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
SchulzLab/STITCHIT
Learning gene-specific regulatory elements from epigenetic data
SchulzLab/Aeron
Alignment, quantification and fusion prediction from long RNA reads
SchulzLab/EpigenomeAnalysisTutorial-2020
This website contains material for an epigenome analysis tutorial that covers ATAC-seq analysis and integration with TF motifs and gene expression
SchulzLab/RAPID
RAPID is a set of tools for the alignment, and analysis of genomic regions with small RNA clusters derived from small RNA sequencing data.
SchulzLab/SNEEP
SNp Exploration and Analysis using EPigenomics data
SchulzLab/Triangulate
Inferring regulators from single cell RNA-seq data
SchulzLab/TriplexAligner
A method for sequence based prediction of RNA-DNA triplices.
SchulzLab/SOS
Automated de novo transcriptome assembly
SchulzLab/JAMI
Java tool for computing conditional mutual information from large datasets
SchulzLab/MASSIF
Improved motif enrichment analysis using protein domain type information
SchulzLab/SingleCellStitchit
Learning enhancer-gene interactions from single cell data
SchulzLab/Codefinder
Learning translation code between sets of DNA motifs
SchulzLab/RJAMI
R-wrapper for JAMI: Computation of conditional mutual information from large datasets
SchulzLab/SplitOrfs
A workflow to computationally detect transcripts that could generate several distinct ORFs that match to the same protein. This can be used to find for example nonsense-mediated decay transcripts that make more than one ORF.
SchulzLab/TFAnalysis
processing and analysis of transcription factor binding sites
SchulzLab/iSeelect
Shiny server wrapper for analysis of data with ISEE
SchulzLab/scRNA_TF_Integrator
Integrate scRNA data with TF binding site prediction analysis
SchulzLab/EpiRegioDB-1
Analysis and retrieval of Regulatory EleMents (REMs) linked to genes
SchulzLab/FAME
SchulzLab/GAZE
single cell regulatory analyzer
SchulzLab/Liver-Steatosis-Supplementary
This project hosts additional scripts part of the recent paper about epigenomic analysis in liver steatosis
SchulzLab/MakeTitlesGreatAgain
Helper file to fix wrong capitalisation in latex references
SchulzLab/MetaCellaR
metacelling things
SchulzLab/PairedSC
SchulzLab/RNAFunctionPrediction
Methods for supervised prediction of RNA function
SchulzLab/TripLexicon
Source code and info for the TripLexicon Webserver