Pinned Repositories
Aeron
Alignment, quantification and fusion prediction from long RNA reads
EpigenomeAnalysisTutorial-2020
This website contains material for an epigenome analysis tutorial that covers ATAC-seq analysis and integration with TF motifs and gene expression
EpigenomicsTutorial-ISMB2017
Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
KREATION
automated k-mer range estimation for de novo transcriptome assembly
ORNA
Fast in-silico normalization algorithm for NGS data
RAPID
RAPID is a set of tools for the alignment, and analysis of genomic regions with small RNA clusters derived from small RNA sequencing data.
SNEEP
SNp Exploration and Analysis using EPigenomics data
STARE
TF analysis from epigenetic and Hi-C data
STITCHIT
Learning gene-specific regulatory elements from epigenetic data
TEPIC
Annotation of genomic regions using transcription factor binding sites and epigenetic data
SchulzLab's Repositories
SchulzLab/TFAnalysis
processing and analysis of transcription factor binding sites
SchulzLab/OntologyEval
OntologyEval is an approach that can be used to compare batch effect correction of normalisation methods for cell heterogeneous genome-wide datasets, like RNA-seq. It uses the cell ontology to evaluate whether datasets derived from different cell types are similar to one another.
SchulzLab/ChromaClique
SchulzLab/scBP
single cell analysis of bidirectional promoters
SchulzLab/KREATION
automated k-mer range estimation for de novo transcriptome assembly
SchulzLab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
SchulzLab/TFML
SchulzLab/TFBS
SchulzLab/SEECER
Error Correction for non-uniform coverage sequencing data
SchulzLab/oases
De novo transcriptome assembler for short reads
SchulzLab/Bisquick