SchulzLab/TEPIC

Define separate moduls for Hi-C data and functional epigenetic annotations

Xethic opened this issue · 4 comments

Finally, the module needs to be included in the whole TEPIC project. An appropriate API or interface (including a documentation) would be suitable.

Finished this by 80%. Currently, finding last bugs by testing. A smarter datastructure could also help reducing the runtime.

This needs to be refactored into a separate Module. Ideally, combine this with the python to C++ port.

Generalize this to handle arbitrary epigenetic data (enhancer annotations etc.) and Hi-C data in a standardized format, e.g. Loop-files generated by the HiCCUPS algorithm.

Will be done while merging branch development into master.