FDI Laboratory
FAIR Data Informatics Laboratory at the University of California, San Diego developing the SciCrunch.org infrastructure
La Jolla, CA
Pinned Repositories
Antibody-Watch
Antibody Watch: Text Mining Antibody Specificity from the Literature
bio-answerfinder
A question answering system for biomedical literature
bio_electra
Bio-Electra - Small and efficient discriminatively pre-trained language representation models for biomedical text mining
dkNET-Repository-Finder-Data
Repository for the data behind the repository finder
NIF-Ontology
NIF Standard Ontologies (NIFSTD)
rdw
Resource Disambiguator Web
resource_disambiguator
Batch processes for RDW
scibot
curation workflow automation and coordination
SciCrunch-Portal
SciCrunch Portal
sparc-curation
code and files for SPARC curation workflows
FDI Laboratory's Repositories
SciCrunch/NIF-Ontology
NIF Standard Ontologies (NIFSTD)
SciCrunch/scibot
curation workflow automation and coordination
SciCrunch/sparc-curation
code and files for SPARC curation workflows
SciCrunch/bio-answerfinder
A question answering system for biomedical literature
SciCrunch/Antibody-Watch
Antibody Watch: Text Mining Antibody Specificity from the Literature
SciCrunch/bio_electra
Bio-Electra - Small and efficient discriminatively pre-trained language representation models for biomedical text mining
SciCrunch/SciCrunch-Portal
SciCrunch Portal
SciCrunch/paperpdf2xml
A set of Python 3 CLI to convert scientific papers in PDF format to XML documents with sections and tables.
SciCrunch/resource_disambiguator
Batch processes for RDW
SciCrunch/API-Handbook
Gitbook with information and documentation of APIs and services provided by FAIR Data Informatics Lab
SciCrunch/dkNET-Repository-Finder-Data
Repository for the data behind the repository finder
SciCrunch/python-datasets-interface
SciCrunch/rdw
Resource Disambiguator Web
SciCrunch/API-Handbook-Docs
Repository for API Handbook Gitbook
SciCrunch/BICCN-Infrastructure-Draft
Documentation about BICCN Infrastructure and Data Policies
SciCrunch/BioMart-harvester
A BioMart harvester written in PHP to crawl BioMart repositories.
SciCrunch/BulkChanger
A tool to perform a mass change to a desired element in a desired property in a MediaWiki that implements Semantic MediaWiki and Semantic Forms.
SciCrunch/CINERGI-PROV
Data from CINERGI pipeline and clients to connect to the server
SciCrunch/connectivity-re
Code/data repository for ANS connectivity relation extraction
SciCrunch/FAIR-Rich-Metadata
Specification of FAIR Rich Metadata
SciCrunch/Foundry-Docs
Gitbook repository for Foundry ecosystem documentation
SciCrunch/Navigator
A javascript toolkit to embed data and literature search utilizing the Neuroscience Information Framework REST search services.
SciCrunch/OAI-PMH-harvester
An OAI-PMH harvester written in PHP to crawl OAI repositories. Includes ability to update and restart prior crawls.
SciCrunch/ontoquest
Ontoquest webservice
SciCrunch/quantitative-db
A flexible database for storing arbitrary quantitative measurements
SciCrunch/SciGraph
A Neo4j backed ontology store
SciCrunch/SPARC-Citations
Scripts to aggregate SPARC Citation information