biotypes chart showing only last 7 entries
Closed this issue · 2 comments
jakubovciak commented
Hi,
is this on purpose? it selects only last seven biotypes from tmp_file , missing protein coding genes and other important groups leaving the chart quite meaningless (at least in my case).
Line 944 in 632aef1
I'd suggest adding something like
cut -f 1,7 ${bam_featurecounts.baseName}_biotype.featureCounts.txt | sort -k 2 -n -r | head -n 10 > tmp_file
thanks,
JK
ewels commented
Ah no, I guess this was accidental - maybe the file that @Hammarn was looking at only had 7 categories or something?
Hammarn commented
hmm, I have no idea why I did this. I don't really see a point in restricting the categories at all to be honest. It's not that many.I'll make a PR.