Scy-bio

Pinned Repositories

3d-dna
3D de novo assembly (3D DNA) pipeline
Language:Shell00
BASE_2020
Language:Python00
clash
A rule-based tunnel in Go.
Language:Go10
EiaD_build
Snakemake pipeline to create EiaD dataset for eyeIntegration
Language:R10
electron-ssr
ssr for ubuntu
10
enrichplot
Visualization of Functional Enrichment Result
Language:R1 0 00
Extract-intron-from-gff3
This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
Language:Perl10
nvim
The Ultimate NeoVim Config for Colemak Users
Language:Vim Script10
pHASE-Stitcher
a python program to stitch the ReadBack phased haplotypes in F1 hybrids.
Language:Python10
scripts
In-house scripts for data processing and analysis
Language:Python10

Scy-bio's Repositories

Scy-bio/clash
A rule-based tunnel in Go.
Language:Go10
Scy-bio/EiaD_build
Snakemake pipeline to create EiaD dataset for eyeIntegration
Language:R10
Scy-bio/electron-ssr
ssr for ubuntu
10
Scy-bio/enrichplot
Visualization of Functional Enrichment Result
Language:R1 0 00
Scy-bio/Extract-intron-from-gff3
This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
Language:Perl10
Scy-bio/nvim
The Ultimate NeoVim Config for Colemak Users
Language:Vim Script10
Scy-bio/pHASE-Stitcher
a python program to stitch the ReadBack phased haplotypes in F1 hybrids.
Language:Python10
Scy-bio/scripts
In-house scripts for data processing and analysis
Language:Python10
Scy-bio/3d-dna
3D de novo assembly (3D DNA) pipeline
Language:Shell00
Scy-bio/BASE_2020
Language:Python00
Scy-bio/Bioinformatics-Training
Bioinformatics training resources
Scy-bio/CompMap
Compares reads mapped to two reference and splits best alignments
Scy-bio/DGE_workshop
Scy-bio/diamond
Accelerated BLAST compatible local sequence aligner.
Language:C++0 0
Scy-bio/Equine_lncRNA
equine lncRNA discovery pipeline
Language:R0 0
Scy-bio/exonerate
A generic tool for sequence alignment
Scy-bio/exonerate-gff3
exonerate fork with added gff3 support
Scy-bio/ezLncPred
A Python package with integrated lncRNA prediction methods
Scy-bio/Haplotype-resolved-potato-genome
The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform the analyses in the paper 'Haplotype-resolved genome analyses of a heterozygous diploid potato' (under review).
Scy-bio/HuaSmallTools
Some bioinformic domestic scripts.
Scy-bio/Intro-to-rnaseq-hpc-orchestra
This repository has teaching materials for a 2-day Introduction to RNA-sequencing data analysis workshop using the Orchestra Cluster.
Scy-bio/my_WGCNA
Scy-bio/OtterGenomeProject
Scripts associated with the sea otter and giant otter genome project (Beichman et al. 2019)
Scy-bio/PybridASE
Pipeline to study allele-specific expression in hybrids
Scy-bio/qdod
Querying disparate oyster datasets