Pinned Repositories
AssistedNuclei3DTracking
Companion code to the book chapter "Assisted Nuclei 3D Tracking of heterogeneous groups of migrating cells in vivo"
AutoScanJ
A suite of ImageJ and Micro-Manager scripts to perform intelligent imaging
deStripe
This macro implements an image filter meant to mitigate close to parallel attenuation stripes, such as the ones typically observed in (fixed) light sheet microscopy.
DLPythonNotebooks
Some Python notebooks demoing Deep Learning
Exotracker
A python script to track exocitosis events in yeast cells
FFTdeStriper
This filter is meant to attenuate parallel, periodic stripes by FFT filtering.
LOBSTER
Little OBjects Segmentation and Tracking EnviRonment
LOBSTER_Annotator
A tool to annotate 2D/3D microscopy images
MosaicExplorerJ
An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets
SebastienTs's Repositories
SebastienTs/MosaicExplorerJ
An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets
SebastienTs/LOBSTER
Little OBjects Segmentation and Tracking EnviRonment
SebastienTs/AutoScanJ
A suite of ImageJ and Micro-Manager scripts to perform intelligent imaging
SebastienTs/deStripe
This macro implements an image filter meant to mitigate close to parallel attenuation stripes, such as the ones typically observed in (fixed) light sheet microscopy.
SebastienTs/AssistedNuclei3DTracking
Companion code to the book chapter "Assisted Nuclei 3D Tracking of heterogeneous groups of migrating cells in vivo"
SebastienTs/FFTdeStriper
This filter is meant to attenuate parallel, periodic stripes by FFT filtering.
SebastienTs/DLPythonNotebooks
Some Python notebooks demoing Deep Learning
SebastienTs/Exotracker
A python script to track exocitosis events in yeast cells
SebastienTs/LOBSTER_Annotator
A tool to annotate 2D/3D microscopy images
SebastienTs/sebastients.github.io
LOBSTER front page and getting started
SebastienTs/tissueseg3d
A workflow to segment cells in a 3D stack with membrane and nuclear labels (2 channels)
SebastienTs/TrackFluoOrganoids
Segment & track fluorescent organoids in a 2D time-lapse
SebastienTs/W_NucleiSegmentation3D-Test
A workflow to test sandbox and pulling from a personal GitHub