Preprocessing installation fails
Opened this issue · 1 comments
For installation of the preprocessing I tried the code:
conda install preprocessing -c fasnicar
It returns:
Channels:
- fasnicar
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): -
done
Solving environment: failed
LibMambaUnsatisfiableError: Encountered problems while solving:
- nothing provides bowtie2 >=2.0.0 needed by preprocessing-0.2.4-py_0
Could not solve for environment specs
The following package could not be installed
└─ preprocessing is not installable because it requires
└─ bowtie2 >=2.0.0 , which does not exist (perhaps a missing channel).
I installed bowtie2 with the most recent version, and that part works. I am not sure how to solve this problem.
If you installed bowtie2 separately from conda it won't be 'seen' by conda when installing the preprocessing as it is listed as a dependency. As suggested but the error message
└─ bowtie2 >=2.0.0 , which does not exist (perhaps a missing channel).
You should also include the bioconda channel when installing the package (-c bioconda
), and that should solve the issue.
Regards,
Francesco