fasnicar

Postdoc @SegataLab & Bioinformatician @zoe

University of TrentoTrento, Italy

Pinned Repositories

graphlan
High-quality circular representations of taxonomic and phylogenetic trees
Language:Python89 6 928
MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
Language:Python302 20 20586
phylophlan
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Language:Python127 6 11333
Chiron
Tools and utilities for running Dockerized metagenomics tools in the Cloud
Language:Shell0 1 00
fasnicar
0 0 00
fasnicar.github.io
0 1 00
screenrc
0 1 00
utils
Language:Python1 1 01
export2graphlan
Conversion software tool for producing both annotation and tree files for GraPhlAn
Language:Python8 2 56
preprocessing
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
Language:Python9 2 23

fasnicar's Repositories

fasnicar/utils
Language:Python1 1 01
fasnicar/Chiron
Tools and utilities for running Dockerized metagenomics tools in the Cloud
Language:Shell0 1 00
fasnicar/fasnicar
0 0 00
fasnicar/fasnicar.github.io
0 1 00
fasnicar/q2-phylogeny
Phylogenetic reconstruction, and operations on phylogenetic trees.
Language:Python0 1 00
fasnicar/screenrc
0 1 00
fasnicar/qiime2
Official repository for the QIIME 2 framework.
Language:Python1 0
fasnicar/Roary
Rapid large-scale prokaryote pan genome analysis
Language:Perl1 0
fasnicar/rocker
R configurations for Docker
Language:Dockerfile1 0
fasnicar/sam2lca
Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
Language:Python0 0
fasnicar/sepp
Ensemble of HMM methods (SEPP, TIPP, UPP)
Language:Python1 0
fasnicar/wol
Language:Jupyter Notebook1 0