Pinned Repositories
BioinformaticsIntroduction
Tutorials to get started in bioinformatics
Cancer_Genomics
Assembling pipelines for our cancer genomics work. This includes neoepitope identification, and sex difference analyses.
EpitopePipeline
Pipeline for predicting neoepitopes
GTEx_Brains
Kenya_Fst
Kenya_Selection_and_Demography
Understanding population history as it relates to inferences of selection
RodentAddiction
SexInference
Infer sex from DNA sequencing data and RNA sequencing data
XY_RNAseq
XYalign
Sex Chromosome Lab's Repositories
SexChrLab/BioinformaticsIntroduction
Tutorials to get started in bioinformatics
SexChrLab/XY_RNAseq
SexChrLab/Cancer_Genomics
Assembling pipelines for our cancer genomics work. This includes neoepitope identification, and sex difference analyses.
SexChrLab/RodentAddiction
SexChrLab/SexInference
Infer sex from DNA sequencing data and RNA sequencing data
SexChrLab/Genomics_CURE
SexChrLab/GTEx_Brains
SexChrLab/Kenya_Fst
SexChrLab/Placenta_Sex_Diff
Sex differences in full term uncomplicated human placentas
SexChrLab/VariantCalling
Investigating the effects of different parameters on variant calling genome-wide (A, X, Y, mtDNA)
SexChrLab/CURES
Course based research experiences
SexChrLab/Viral_HCC_Sex_Diff
SexChrLab/Cancer_CURE
Cancer genomics course-based undergraduate research
SexChrLab/CancerSexCheck
Identifying sex chromosome complement in cancers.
SexChrLab/Cayo_X_inactivation
SexChrLab/CCLE_SexChr
Identifying sex chromosome complement in cancer cell line encyclopedia (CCLE) samples
SexChrLab/ComparativePlacenta
SexChrLab/CurrentLabPractices
This is where we will update our current genomics and statistical approaches.
SexChrLab/HCC_Immunity
SexChrLab/Introgression_Cancer
SexChrLab/Mayo_breast_regional_heterogeneity
Multiregional sampling analysis
SexChrLab/MOSAIC_GBM_Imaging_Omics
SexChrLab/Nasonia
Parent and species of origin ASE
SexChrLab/Placenta_XCI
Understanding patterns of X chromosome inactivation in full term human placenta
SexChrLab/PopInf
Quick inference of population history
SexChrLab/Scripts_Library
Contains a library of scripts used frequently
SexChrLab/SexChrCoordinates
Coordinates for genomic features on human X and Y chromosomes.
SexChrLab/T2T_ChromosomeY
Code for the analyses included in the T2T chromosome Y paper
SexChrLab/TE_expression
SexChrLab/Vannan-Dissertation-Supplements