Sex Chromosome Lab

Codes from Sex Chr Lab projects

Pinned Repositories

BioinformaticsIntroduction
Tutorials to get started in bioinformatics
24 3 06
Cancer_Genomics
Assembling pipelines for our cancer genomics work. This includes neoepitope identification, and sex difference analyses.
Language:Python4 3 00
EpitopePipeline
Pipeline for predicting neoepitopes
Language:Python41
GTEx_Brains
Language:R10
Kenya_Fst
Language:R1 3 00
Kenya_Selection_and_Demography
Understanding population history as it relates to inferences of selection
Language:R10
RodentAddiction
Language:HTML20
SexInference
Infer sex from DNA sequencing data and RNA sequencing data
Language:R2 5 31
XY_RNAseq
Language:R8 3 05
XYalign
Language:Python23 5 12

Sex Chromosome Lab's Repositories

SexChrLab/BioinformaticsIntroduction
Tutorials to get started in bioinformatics
24 3 06
SexChrLab/XY_RNAseq
Language:R8 3 05
SexChrLab/Cancer_Genomics
Assembling pipelines for our cancer genomics work. This includes neoepitope identification, and sex difference analyses.
Language:Python4 3 00
SexChrLab/RodentAddiction
Language:HTML20
SexChrLab/SexInference
Infer sex from DNA sequencing data and RNA sequencing data
Language:R2 5 31
SexChrLab/Genomics_CURE
Language:Shell1 4 02
SexChrLab/GTEx_Brains
Language:R10
SexChrLab/Kenya_Fst
Language:R1 3 00
SexChrLab/Placenta_Sex_Diff
Sex differences in full term uncomplicated human placentas
Language:R1 2 00
SexChrLab/VariantCalling
Investigating the effects of different parameters on variant calling genome-wide (A, X, Y, mtDNA)
Language:Python1 3 0
SexChrLab/CURES
Course based research experiences
Language:Shell00
SexChrLab/Viral_HCC_Sex_Diff
Language:HTML0 4 00
SexChrLab/Cancer_CURE
Cancer genomics course-based undergraduate research
4 0
SexChrLab/CancerSexCheck
Identifying sex chromosome complement in cancers.
Language:R4 02
SexChrLab/Cayo_X_inactivation
Language:HTML4 0
SexChrLab/CCLE_SexChr
Identifying sex chromosome complement in cancer cell line encyclopedia (CCLE) samples
Language:Jupyter Notebook3
SexChrLab/ComparativePlacenta
SexChrLab/CurrentLabPractices
This is where we will update our current genomics and statistical approaches.
SexChrLab/HCC_Immunity
Language:R1
SexChrLab/Introgression_Cancer
Language:Python4 0
SexChrLab/Mayo_breast_regional_heterogeneity
Multiregional sampling analysis
Language:Python
SexChrLab/MOSAIC_GBM_Imaging_Omics
Language:Python
SexChrLab/Nasonia
Parent and species of origin ASE
Language:R4 0
SexChrLab/Placenta_XCI
Understanding patterns of X chromosome inactivation in full term human placenta
Language:R5 0
SexChrLab/PopInf
Quick inference of population history
Language:R2 11
SexChrLab/Scripts_Library
Contains a library of scripts used frequently
Language:Python
SexChrLab/SexChrCoordinates
Coordinates for genomic features on human X and Y chromosomes.
4 0
SexChrLab/T2T_ChromosomeY
Code for the analyses included in the T2T chromosome Y paper
4 0
SexChrLab/TE_expression
SexChrLab/Vannan-Dissertation-Supplements
4 0