Sh1ne111

PhD candidate majored in plant genomics and population genetics

Agricultral Genomics Insititute at Shenzhen(AGIS)Shenzhen, China

Pinned Repositories

plant-scripts
Scripting analyses of genomes in Ensembl Plants
Language:Perl36 18 78
biocode
Bioinformatics code libraries and scripts
Language:Python1 1 00
DeepLearning-500-questions
深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。全书分为18个章节，50余万字。由于水平有限，书中不妥之处恳请广大读者批评指正。未完待续............ 如有意合作，联系scutjy2015@163.com 版权所有，违权必究 Tan 2018.06
1 1 00
Genome-annotation-pipeline
Genome annotation
Language:Perl1 0 00
LocusZoom-Pipeline
LocusZoom Pipeline Project
Language:Python1 1 00
manhattan_generator
Manhattan plot Generator
Language:Python1 1 00
metabolomic_selection_for_enhanced_fruit_flavor
Repository for Colantonio et al., 2022, "Metabolomic Selection for Enhanced Fruit Flavor"
Language:R1 0 00
naive_seq_align
A simple sequence alignment
Language:C1 1 00
PanMarker
Language:Python0 0 00
SV_genotyping
This repo documents the population genotyping of structural variations (SVs) using tea graph pangenome
Language:Shell2 1 11

Sh1ne111's Repositories

Sh1ne111/SV_genotyping
This repo documents the population genotyping of structural variations (SVs) using tea graph pangenome
Language:Shell2 1 11
Sh1ne111/Genome-annotation-pipeline
Genome annotation
Language:Perl1 0 00
Sh1ne111/metabolomic_selection_for_enhanced_fruit_flavor
Repository for Colantonio et al., 2022, "Metabolomic Selection for Enhanced Fruit Flavor"
Language:R1 0 00
Sh1ne111/mummer-ggplot
Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
Language:R1 1 01
Sh1ne111/naive_seq_align
A simple sequence alignment
Language:C1 1 00
Sh1ne111/NAM-genomes
Detailed bioinformatics scripts and methods used in the NAM genome paper.
Language:R1 1 00
Sh1ne111/synvisio
SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.
Language:JavaScript1 1 01
Sh1ne111/PanMarker
Language:Python0 0 00
Sh1ne111/Bioinfo_LeetCode
让我们以刷LeetCode题目的形式，来编程解决生物信息学问题吧，Come on
Language:Python1 0
Sh1ne111/bioinformatics
tools for biolinux
Language:Perl1 0
Sh1ne111/Data-Structure
《数据结构》-严蔚敏.吴伟民-教材源码与习题解析
Language:C1 0
Sh1ne111/FunFinder_Pangenome
Data analysis of Funannotate and Orthofinder outputs to Pangenome results
Language:Python1 0
Sh1ne111/gggenomes
A grammar of graphics for comparative genomics
Language:R1 01
Sh1ne111/graphlayouts
new layout algorithms for network visualizations in R
Language:R1 0
Sh1ne111/Guideline-for-Computational-Biology-and-Bioinformatics
1 01
Sh1ne111/HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
Language:Python1 0
Sh1ne111/JinfeiChen_scripts
Language:C1 0
Sh1ne111/learn-data-structures
数据结构（C语言描述）学习笔记
Language:C1 01
Sh1ne111/leetcode
LeetCode in pure C
Language:C1 0
Sh1ne111/lh3-snippets
Language:C1 0
Sh1ne111/locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
Language:R1 0
Sh1ne111/LocusZooms
Make LocusZoom-like plots with your own LD matrix.
Language:HTML0 0
Sh1ne111/MyBook
Language:Jupyter Notebook1 01
Sh1ne111/NAM_Pan_Genome_Analysis
Language:R1 0
Sh1ne111/seq-align
Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment
Language:C1 0
Sh1ne111/SVsFromGenomes
Language:Perl1 0
Sh1ne111/Synima
Synteny Imager
Language:Perl1 0
Sh1ne111/table2itol
Generating iToL annotations from Spreadsheet or CSV files
Language:R1 0
Sh1ne111/Telomeres_and_Centromeres
This is a method to find telomeres and centromeres in plants.
0 0
Sh1ne111/xmatchview
🗻 Visualization of genome/gene sequence synteny
Language:Python1 0