/datasharing_TAS

How to share data for collaboration

Primary LanguageTeX

\begin{thebibliography}{xx}

\harvarditem{Baggerly}{2010}{baggerly2010disclose}
Baggerly, K.  \harvardyearleft 2010\harvardyearright , `Disclose all data in
  publications', {\em Nature} {\bf 467}(7314),~401.

\harvarditem{Broman \harvardand\ Woo}{2017}{broman_data_2017}
Broman, K.~W. \harvardand\ Woo, K.~H.  \harvardyearleft 2017\harvardyearright ,
  Data organization in spreadsheets, Technical Report e3183v1, PeerJ Preprints.
\newblock DOI: 10.7287/peerj.preprints.3183v1.
\newline\harvardurl{https://peerj.com/preprints/3183}

\harvarditem{{\em {JSON}: {The} {Fat}-{Free} {Alternative} to
  {XML}}}{n.d.}{noauthor_json:_nodate}
{\em {JSON}: {The} {Fat}-{Free} {Alternative} to {XML}}  \harvardyearleft
  n.d.\harvardyearright .
\newline\harvardurl{http://www.json.org/xml.html}

\harvarditem{Leek \harvardand\ Peng}{2015}{leek2015opinion}
Leek, J.~T. \harvardand\ Peng, R.~D.  \harvardyearleft 2015\harvardyearright ,
  `Opinion: Reproducible research can still be wrong: Adopting a prevention
  approach', {\em Proceedings of the National Academy of Sciences} {\bf
  112}(6),~1645--1646.

\harvarditem{Newman \harvardand\ Klyne}{n.d.}{newman_date_nodate}
Newman, C. \harvardand\ Klyne, G.  \harvardyearleft n.d.\harvardyearright ,
  `Date and {Time} on the {Internet}: {Timestamps}'.
\newline\harvardurl{https://tools.ietf.org/html/rfc3339.html}

\harvarditem{Peng}{2011}{peng_reproducible_2011}
Peng, R.~D.  \harvardyearleft 2011\harvardyearright , `Reproducible {Research}
  in {Computational} {Science}', {\em Science} {\bf 334}(6060),~1226--1227.
\newline\harvardurl{http://science.sciencemag.org/content/334/6060/1226}

\harvarditem{{\em R: {The} {R} {Project} for {Statistical}
  {Computing}}}{n.d.}{_r}
{\em R: {The} {R} {Project} for {Statistical} {Computing}}  \harvardyearleft
  n.d.\harvardyearright .
\newline\harvardurl{https://www.r-project.org/}

\harvarditem[White et~al.]{White, Baldridge, Brym, Locey, McGlinn \harvardand\
  Supp}{2013}{white_nine_2013}
White, E.~P., Baldridge, E., Brym, Z.~T., Locey, K.~J., McGlinn, D.~J.
  \harvardand\ Supp, S.~R.  \harvardyearleft 2013\harvardyearright , `Nine
  simple ways to make it easier to (re)use your data', {\em Ideas in Ecology
  and Evolution} {\bf 6}(2).
\newline\harvardurl{http://ojs.library.queensu.ca/index.php/IEE/article/view/4608}

\harvarditem{Wickham}{2014}{_tidy_data}
Wickham, H.  \harvardyearleft 2014\harvardyearright , `Tidy data', {\em Journal
  of Statistical Software} {\bf 59}(10).
\newline\harvardurl{https://www.jstatsoft.org/article/view/v059i10}

\harvarditem[Wilson et~al.]{Wilson, Aruliah, Brown, Hong, Davis, Guy, Haddock,
  Huff, Mitchell, Plumbley, Waugh, White \harvardand\
  Wilson}{2014}{wilson_best_2014}
Wilson, G., Aruliah, D.~A., Brown, C.~T., Hong, N. P.~C., Davis, M., Guy,
  R.~T., Haddock, S. H.~D., Huff, K.~D., Mitchell, I.~M., Plumbley, M.~D.,
  Waugh, B., White, E.~P. \harvardand\ Wilson, P.  \harvardyearleft
  2014\harvardyearright , `Best {Practices} for {Scientific} {Computing}', {\em
  PLOS Biology} {\bf 12}(1),~e1001745.
\newline\harvardurl{http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001745}

\harvarditem[Wilson et~al.]{Wilson, Bryan, Cranston, Kitzes, Nederbragt
  \harvardand\ Teal}{2017}{wilson_good_2017}
Wilson, G., Bryan, J., Cranston, K., Kitzes, J., Nederbragt, L. \harvardand\
  Teal, T.~K.  \harvardyearleft 2017\harvardyearright , `Good enough practices
  in scientific computing', {\em PLOS Computational Biology} {\bf
  13}(6),~e1005510.
\newline\harvardurl{http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005510}

\harvarditem[Zeeberg et~al.]{Zeeberg, Riss, Kane, Bussey, Uchio, Linehan,
  Barrett \harvardand\ Weinstein}{2004}{zeeberg_mistaken_2004}
Zeeberg, B.~R., Riss, J., Kane, D.~W., Bussey, K.~J., Uchio, E., Linehan,
  W.~M., Barrett, J.~C. \harvardand\ Weinstein, J.~N.  \harvardyearleft
  2004\harvardyearright , `Mistaken {Identifiers}: {Gene} name errors can be
  introduced inadvertently when using {Excel} in bioinformatics', {\em BMC
  Bioinformatics} {\bf 5},~80.
\newline\harvardurl{http://dx.doi.org/10.1186/1471-2105-5-80}

\end{thebibliography}