/MCIBS556_20FA_project

Class project for MCIBS556 in 20Fall

Primary LanguageJupyter Notebook

MCIBS556_20FA_project

To repeat all the results presented for MCBIS556 project, please follow the steps below:

Install dependencies

  1. Install conda or miniconda (version >= 4.6)
  2. Clone this repo
git clone https://github.com/ShaopengLiu1/MCIBS556_20FA_project.git
  1. Go to MCIBS556_20FA_project/src folder, then run the scripts listed below:
  • install conda environment by (!!!this file will be merged with Morris' and be renamed later!!!)
bash install_dependency_shaopeng.sh
  • download the NCBI bacteira genome/protein database
#Note: this script would run ~10 hours and need ~40GB storage!!!
#For convenience, "nohup" is recomended, please run the cmd and just leave it to run (it's safe to quit your session with nohup)
nohup bash download_ncbi_database.sh &