ShaunFChen
Postdoctoral Researcher | Predictive Modeling, Bioinformatics, Polygenic Risk
@TorkamaniLab La Jolla, CA
Pinned Repositories
2020_FA_HPC
Class material for HPC in Scripps Research
CBB_Parallel_Multiprocessing
Scripps CBB CodeTopics - Basic GNU Parallel and Python Multiprocessing
CAD_meta_prediction
Machine learning pipeline for meta-prediction of coronary artery disease
Genotype_Imputation_Pipeline
Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.
imputation_accuracy_calculator
zoish
Zoish is a Python package that streamlines machine learning by leveraging SHAP values for feature selection and interpretability, making model development more efficient and user-friendly
ShaunFChen's Repositories
ShaunFChen/2020_FA_HPC
Class material for HPC in Scripps Research
ShaunFChen/Applied-Bioinformatics
Student course material for the Applied Bioinformatics course at Scripps Research
ShaunFChen/Applied-Bioinformatics-HW
Applied-Bioinformatics-HW
ShaunFChen/Applied_bioinfo_nbgrader
Instructions to build nbgrader on Garibaldi @ Scripps Research
ShaunFChen/CBB_Parallel_Multiprocessing
Scripps CBB CodeTopics - Basic GNU Parallel and Python Multiprocessing
ShaunFChen/datasets
A public repo of datasets
ShaunFChen/paper4-bedpca
PCA paper
ShaunFChen/readme-template
README.md template for your open-source project
ShaunFChen/regenie
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.