SheikhRiad's Stars
typicode/lowdb
Simple and fast JSON database
cocos2d/cocos2d-x
Cocos2d-x is a suite of open-source, cross-platform, game-development tools utilized by millions of developers across the globe. Its core has evolved to serve as the foundation for Cocos Creator 1.x & 2.x.
facebookarchive/stetho
Stetho is a debug bridge for Android applications, enabling the powerful Chrome Developer Tools and much more.
square/moshi
A modern JSON library for Kotlin and Java.
Datalux/Osintgram
Osintgram is a OSINT tool on Instagram. It offers an interactive shell to perform analysis on Instagram account of any users by its nickname
microsoft/winget-pkgs
The Microsoft community Windows Package Manager manifest repository
streaak/keyhacks
Keyhacks is a repository which shows quick ways in which API keys leaked by a bug bounty program can be checked to see if they're valid.
DefectDojo/django-DefectDojo
DevSecOps, ASPM, Vulnerability Management. All on one platform.
NAalytics/Assemblies-of-putative-SARS-CoV2-spike-encoding-mRNA-sequences-for-vaccines-BNT-162b2-and-mRNA-1273
RNA vaccines have become a key tool in moving forward through the challenges raised both in the current pandemic and in numerous other public health and medical challenges. With the rollout of vaccines for COVID-19, these synthetic mRNAs have become broadly distributed RNA species in numerous human populations. Despite their ubiquity, sequences are not always available for such RNAs. Standard methods facilitate such sequencing. In this note, we provide experimental sequence information for the RNA components of the initial Moderna (https://pubmed.ncbi.nlm.nih.gov/32756549/) and Pfizer/BioNTech (https://pubmed.ncbi.nlm.nih.gov/33301246/) COVID-19 vaccines, allowing a working assembly of the former and a confirmation of previously reported sequence information for the latter RNA. Sharing of sequence information for broadly used therapeutics has the benefit of allowing any researchers or clinicians using sequencing approaches to rapidly identify such sequences as therapeutic-derived rather than host or infectious in origin. For this work, RNAs were obtained as discards from the small portions of vaccine doses that remained in vials after immunization; such portions would have been required to be otherwise discarded and were analyzed under FDA authorization for research use. To obtain the small amounts of RNA needed for characterization, vaccine remnants were phenol-chloroform extracted using TRIzol Reagent (Invitrogen), with intactness assessed by Agilent 2100 Bioanalyzer before and after extraction. Although our analysis mainly focused on RNAs obtained as soon as possible following discard, we also analyzed samples which had been refrigerated (~4 ℃) for up to 42 days with and without the addition of EDTA. Interestingly a substantial fraction of the RNA remained intact in these preparations. We note that the formulation of the vaccines includes numerous key chemical components which are quite possibly unstable under these conditions-- so these data certainly do not suggest that the vaccine as a biological agent is stable. But it is of interest that chemical stability of RNA itself is not sufficient to preclude eventual development of vaccines with a much less involved cold-chain storage and transportation. For further analysis, the initial RNAs were fragmented by heating to 94℃, primed with a random hexamer-tailed adaptor, amplified through a template-switch protocol (Takara SMARTerer Stranded RNA-seq kit), and sequenced using a MiSeq instrument (Illumina) with paired end 78-per end sequencing. As a reference material in specific assays, we included RNA of known concentration and sequence (from bacteriophage MS2). From these data, we obtained partial information on strandedness and a set of segments that could be used for assembly. This was particularly useful for the Moderna vaccine, for which the original vaccine RNA sequence was not available at the time our study was carried out. Contigs encoding full-length spikes were assembled from the Moderna and Pfizer datasets. The Pfizer/BioNTech data [Figure 1] verified the reported sequence for that vaccine (https://berthub.eu/articles/posts/reverse-engineering-source-code-of-the-biontech-pfizer-vaccine/), while the Moderna sequence [Figure 2] could not be checked against a published reference. RNA preparations lacking dsRNA are desirable in generating vaccine formulations as these will minimize an otherwise dramatic biological (and nonspecific) response that vertebrates have to double stranded character in RNA (https://www.nature.com/articles/nrd.2017.243). In the sequence data that we analyzed, we found that the vast majority of reads were from the expected sense strand. In addition, the minority of antisense reads appeared different from sense reads in lacking the characteristic extensions expected from the template switching protocol. Examining only the reads with an evident template switch (as an indicator for strand-of-origin), we observed that both vaccines overwhelmingly yielded sense reads (>99.99%). Independent sequencing assays and other experimental measurements are ongoing and will be needed to determine whether this template-switched sense read fraction in the SmarterSeq protocol indeed represents the actual dsRNA content in the original material. This work provides an initial assessment of two RNAs that are now a part of the human ecosystem and that are likely to appear in numerous other high throughput RNA-seq studies in which a fraction of the individuals may have previously been vaccinated. ProtoAcknowledgements: Thanks to our colleagues for help and suggestions (Nimit Jain, Emily Greenwald, Lamia Wahba, William Wang, Amisha Kumar, Sameer Sundrani, David Lipman, Bijoyita Roy). Figure 1: Spike-encoding contig assembled from BioNTech/Pfizer BNT-162b2 vaccine. Although the full coding region is included, the nature of the methodology used for sequencing and assembly is such that the assembled contig could lack some sequence from the ends of the RNA. Within the assembled sequence, this hypothetical sequence shows a perfect match to the corresponding sequence from documents available online derived from manufacturer communications with the World Health Organization [as reported by https://berthub.eu/articles/posts/reverse-engineering-source-code-of-the-biontech-pfizer-vaccine/]. The 5’ end for the assembly matches the start site noted in these documents, while the read-based assembly lacks an interrupted polyA tail (A30(GCATATGACT)A70) that is expected to be present in the mRNA.
Qiskit/qiskit-metapackage
Qiskit is an open-source SDK for working with quantum computers at the level of circuits, algorithms, and application modules.
rms-support-letter/rms-support-letter.github.io
An open letter in support of Richard Matthew Stallman being reinstated by the Free Software Foundation
webprofusion/OpenAudio
A list of open source VST/audio plugin projects. Please contribute more links or open source your own plugins.
anouarbensaad/vulnx
vulnx 🕷️ an intelligent Bot, Shell can achieve automatic injection, and help researchers detect security vulnerabilities CMS system. It can perform a quick CMS security detection, information collection (including sub-domain name, ip address, country information, organizational information and time zone, etc.) and vulnerability scanning.
davglass/license-checker
Check NPM package licenses
Uriopass/Egregoria
3D City Builder without a grid
bedimcode/portfolio-responsive-complete
Responsive Personal Portfolio Website HTML CSS & JavaScript
dan200/ComputerCraft
Programmable Computers for Minecraft
rintoj/ngx-virtual-scroller
Virtual Scroll displays a virtual, "infinite" list.
Patrowl/PatrowlManager
PatrOwl - Open Source, Smart and Scalable Security Operations Orchestration Platform
ionic-team/capacitor-plugins
Official plugins for Capacitor ⚡️
syncfusion/ej2-react-ui-components
Syncfusion React UI components library offer more than 50+ cross-browser, responsive, and lightweight react UI controls for building modern web applications.
happysingh23828/Android-Clean-Architecture
This is a sample movie list Android application built to demonstrate use of Clean Architecture tools. Dedicated to all Android Developers - (Kotlin, MVVM, Clean Architecture, Rx-Java, Dagger, OkHttp, Unit Testing, SOLID principles, Code Coverage)
Patrowl/PatrowlHears
PatrowlHears - Vulnerability Intelligence Center / Exploits
leerob/nextjs-multiple-domains
Example using SSR to handle multiple domains on the same project.
kgoins/ldsview
swarrot/SwarrotBundle
A symfony bundle for swarrot integration
anushkadhiman/ObjectTracking-DeepSORT-YOLOv3-TF2
OkaeriPoland/okaeri-validator
Simple Java Bean field validator inspired by Java EE
Evolution-X/vendor_evolution
#KeepEvolving
guillerp8/guille_trucker