Pinned Repositories
BENGAL
Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
bilaterian_GE
Evolution of tissue-specific expression of ancestral genes across vertebrates and insects
DosageCompensation
DynamicPseudogene
EvoFuncPseudogene
ncbi_remap
This is the drosSRA project, where we are remapping all Drosophila melanogaster RNA-seq data to FlyBase release 6 and updating annotations.
PlantPseudo
RetinaEvolution
RNAModMachinery
Analyses from manuscript: Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures (Begik et al. Genome Biology 2020).
SimpleTidy_GeneCoEx
A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
Shengqian95's Repositories
Shengqian95/BENGAL
Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
Shengqian95/bilaterian_GE
Evolution of tissue-specific expression of ancestral genes across vertebrates and insects
Shengqian95/DosageCompensation
Shengqian95/DynamicPseudogene
Shengqian95/EvoFuncPseudogene
Shengqian95/ncbi_remap
This is the drosSRA project, where we are remapping all Drosophila melanogaster RNA-seq data to FlyBase release 6 and updating annotations.
Shengqian95/PlantPseudo
Shengqian95/RetinaEvolution
Shengqian95/RNAModMachinery
Analyses from manuscript: Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures (Begik et al. Genome Biology 2020).
Shengqian95/SimpleTidy_GeneCoEx
A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
Shengqian95/Spermatogenesis
Transcriptome and translatome co-evolution in mammals
Shengqian95/sramongo
A package to download metadata from SRA/Biosample/Geo and dump into a mongo database.
Shengqian95/SubCDR_PMID37603576
Shengqian95/Vignette
Some public codes