glXYPlot changing the count values from ExpressionSet object

[foramashar]

Hi Shian,

Thanks for making an absolutely fantastic visualization tool!
I'm using glXYPlot function to visualize a volcano plot of all my expression data (microarray) and then trying to get a probe level plot on the side.

The main plot and table are ok, but the yaxis on my probe level plot is all wonky. The gene counts I am providing are already in log2 expression units and normalized, so I want them plotted as is. I tried the transform=F and side.log=F options and it doesn't fix it. Do you know what I might be doing wrong?

Thanks!

[Shians]

Would you mind creating a screenshot of how it looks and describe what you want it to look like?