Pinned Repositories
bioinf
work related
biotools
A list of useful bioinformatics resources
cis-x
Search for activating regulatory variants in the tumor genome
cwas
deep-learning
Repo for the Deep Learning Nanodegree Foundations program.
deepsea
DeepSEA in TensorFlow
denovogear
A program to detect denovo-variants using next-generation sequencing data.
dragonstar2019
EasyAmplicon
Easy Amplicon data analysis pipeline
ShirleyLiu-BCH's Repositories
ShirleyLiu-BCH/bioinf
work related
ShirleyLiu-BCH/biotools
A list of useful bioinformatics resources
ShirleyLiu-BCH/cis-x
Search for activating regulatory variants in the tumor genome
ShirleyLiu-BCH/deep-learning
Repo for the Deep Learning Nanodegree Foundations program.
ShirleyLiu-BCH/denovogear
A program to detect denovo-variants using next-generation sequencing data.
ShirleyLiu-BCH/dragonstar2019
ShirleyLiu-BCH/EasyAmplicon
Easy Amplicon data analysis pipeline
ShirleyLiu-BCH/EvalSVcallers
Evaluate the performances (precision and recall) of structural variation (SV) callers
ShirleyLiu-BCH/ExpansionHunterDenovo
A suite of tools for detecting expansions of short tandem repeats
ShirleyLiu-BCH/fastqtl
Fork of FastQTL for SVs
ShirleyLiu-BCH/forest-confidence-interval
Confidence intervals for scikit-learn forest algorithms
ShirleyLiu-BCH/gatk-sv-single-sample
WDLs for the Single Sample GATK-SV pipeline
ShirleyLiu-BCH/gnomad-sv-pipeline
Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2019)
ShirleyLiu-BCH/gnomad_qc
ShirleyLiu-BCH/hail
Scalable genomic data analysis.
ShirleyLiu-BCH/HERA
ShirleyLiu-BCH/HiC_data
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
ShirleyLiu-BCH/MicrobiomeAnalystR
A companion R package for the MicrobiomeAnalyst web server
ShirleyLiu-BCH/MOPline
Detection and genotyping of structural variants
ShirleyLiu-BCH/PyDeepSEA
DeepSEA implements in PyTorch
ShirleyLiu-BCH/qiita
Qiita - A multi-omics databasing effort
ShirleyLiu-BCH/samplot
Plot structural variant signals from many BAMs and CRAMs
ShirleyLiu-BCH/SVFX
Machine learning framework to quantify pathogenicity of structural variants
ShirleyLiu-BCH/svimmer
Structural variant merging tool
ShirleyLiu-BCH/svMIL
Predicting pathogenic non-coding somatic SVs
ShirleyLiu-BCH/svtk
ShirleyLiu-BCH/svtools
Tools for processing and analyzing structural variants.
ShirleyLiu-BCH/V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
ShirleyLiu-BCH/WGD
A suite of tools to evaluate dosage in whole-genome sequencing libraries
ShirleyLiu-BCH/workflow