By Haipeng Li @ USTC
Contact: haipengl@mail.ustc.edu.cn
# Install gcc and gfortran
sudo apt-get install build-essential
sudo apt install gfortran# Download the latest OpenMPI package, or go to http://www.open-mpi.org/software/ompi to download the desired version
wget https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.1.tar.gz
tar xvfz openmpi-4.1.1.tar.gz
cd openmpi-4.1.1
# Configure the installation files and install OpenMPI (this would take quite a while)
./configure --prefix=/usr/local/openmpi CC=gcc FC=gfortran
make # make -j8 # use 8 cores to speed up the make process
sudo make install
# Add env path
export PATH=/usr/local/openmpi/bin:$PATH
source ~/.bashrc
# Check OpenMPI is successfully installed
which mpirun# Anaconda is recommended. For installing Anaconda, please refer to https://docs.anaconda.com/anaconda/install/linux/
# 1. download package from: https://www.anaconda.com/products/individual/download-success
# 2. bash ~/your_Anaconda_package
# Once the Anaconda is installed, create the conda environment for SWIT
conda create --name SWIT python=3.7.5
conda activate SWIT
# Install dependencies using USTC mirrors (whether use Anaconda or not)
pip install numpy obspy scipy matplotlib multiprocess PySimpleGUI psutil Pillow -i https://pypi.mirrors.ustc.edu.cn/simple/# Complie the fd2dmpi forward solver, edit the Makefile.config file, make sure FCC (line 18) is right
cd ~/SWIT-1.0/fd2dmpi/
rm *.mod
make clean
make
# Add fd2dmpi to the env path
export PATH=~/SWIT-1.0/bin:$PATH
# Add toolbox to the env path
export PYTHONPATH=~/SWIT-1.0/toolbox
# Source bashrc
source ~/.bashrc
# Run SWIT via GUI
cd ~/SWIT-1.0/toolbox/
python runswit_Linux.py # or python runswit_MacOS.py
# or Run SWIT via the Python script under the example folder
cd ~/example/some_case/
./run_workflow
# Notice:
# If you use the Intel Compiler
# You need to make the following change in forward and adjoint functions in toolbox/solver.py:
# Change:
# solver_cmd = 'mpirun -np %d fd2dmpi par=%s' % (mpiproc, parfile)
# to:
# solver_cmd = 'mpiexec -np %d fd2dmpi par=%s' % (mpiproc, parfile)SWIT-1.0 has been tested on Ubuntu 16.04, 18.04, 20.04, Centos 7.
It seems that SWIT-1.0 cannot run on MacOS properly due to the problem with the Python multiprocess module.
This issue will be fixed in the near future.| No. | Acquisition | Model | Misfit | Features | Optimization | Size |
|---|---|---|---|---|---|---|
| 1 | Land | Marmousi | Waveform | - | NLCG | 481x121, 25 m |
| 2 | Land | Overthrust | Waveform | - | NLCG | 401x101, 25 m |
| 3 | Marine | Marmousi | Waveform | - | NLCG | 481x141, 25 m |
| 4 | Marine | Overthrust | Waveform | - | NLCG | 401x121, 25 m |
| 5 | Land | Marmousi | Traveltime & Waveform | 1D initial model | NLCG | 401x121, 25 m |
| 6 | Land | Overthrust | Waveform | Multi-scale Inversion | NLCG | 401x101, 25 m |
If you find SWIT is useful, please cite the following work:
1. Li, H., Li, J., Liu, B., Huang, X. (2021). Application of full-waveform tomography on deep seismic profiling dataset for tectonic fault characterization. International Meeting for Applied Geoscience & Energy.
2. Schuster, G. T. (2017). Seismic inversion. Society of Exploration Geophysicists. https://library.seg.org/doi/book/10.1190/1.9781560803423