Pinned Repositories
xqtl-protocol
Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
Assignment-2
BF591-assignment-1
bf591-assignment-2
BF591-Final_Proj
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
r-color-palettes
Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
shrishtee-kandoi.github.io
xqtl-pipeline
Molecular QTL data analysis pipeline developed for ADSP functional genomic consortium
Shrishtee-kandoi's Repositories
Shrishtee-kandoi/BF591-Final_Proj
Shrishtee-kandoi/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
Shrishtee-kandoi/shrishtee-kandoi.github.io
Shrishtee-kandoi/xqtl-pipeline
Molecular QTL data analysis pipeline developed for ADSP functional genomic consortium
Shrishtee-kandoi/Assignment-2
Shrishtee-kandoi/BF591-assignment-1
Shrishtee-kandoi/bf591-assignment-2
Shrishtee-kandoi/BF591-assignment-3
Assignment repository for R for Biological Sciences - Week 3
Shrishtee-kandoi/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Shrishtee-kandoi/r-color-palettes
Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜
Shrishtee-kandoi/bf591-Finalproject
Shrishtee-kandoi/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Shrishtee-kandoi/ExpansionHunter
A tool for estimating repeat sizes
Shrishtee-kandoi/GangSTR
A tool for profiling long STRs from short reads
Shrishtee-kandoi/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
Shrishtee-kandoi/GWAS-pipeline
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
Shrishtee-kandoi/GWAS_Pipeline_CraryLab
Shrishtee-kandoi/Intro-to-rnaseq-hpc-O2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
Shrishtee-kandoi/Kurt-farrell.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Shrishtee-kandoi/Minimac4
Shrishtee-kandoi/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Shrishtee-kandoi/Shrishtee-kandoi
Shrishtee-kandoi/STRetch
Method for detecting STR expansions from short-read sequencing data
Shrishtee-kandoi/variancePartition
Quantify and interpret divers of variation in multilevel gene expression experiments
Shrishtee-kandoi/wdl-bootcamp-june