ShrutiMarwaha
Computational Biologist with experience in Next Gen Sequencing, Machine Learning, Mathematical Modeling.
AcademiaMountain View
Pinned Repositories
bedtools-protocols
Bioinformatics-Related-R-codes
codes related to bioinformatics tasks
CyTOF
Analysis of CyTOF data
GastricCancerMetaAnalysis
find commmon differentially expressed genes among different gastric cancer microarray studies
Gse27342_GeneExpression_CMap_Analysis
Analysis of gene expression data (microarray, GSE27342) to identify differentially expressed genes between tumor and normal tissue. Further use the differentially expressed genes (DEG) to identify potential therapeutic compounds using Connectivity Map (CMap).
gtex-pipeline
GTEx Consortium data production and analysis pipelines
happyCompare
Reporting toolbox for happy output
Head-NeckCancer
Head&NeckCancer repository contains codes for analysis of different Head&NeckCancer datasets
KaggleSFCrime
Kaggle Challenge to classify 39 different crimes that occurred in SF in 12 years. https://www.kaggle.com/c/sf-crime
labs
Rmd source files for the HarvardX series PH525x
ShrutiMarwaha's Repositories
ShrutiMarwaha/Gse27342_GeneExpression_CMap_Analysis
Analysis of gene expression data (microarray, GSE27342) to identify differentially expressed genes between tumor and normal tissue. Further use the differentially expressed genes (DEG) to identify potential therapeutic compounds using Connectivity Map (CMap).
ShrutiMarwaha/KaggleSFCrime
Kaggle Challenge to classify 39 different crimes that occurred in SF in 12 years. https://www.kaggle.com/c/sf-crime
ShrutiMarwaha/bedtools-protocols
ShrutiMarwaha/Bioinformatics-Related-R-codes
codes related to bioinformatics tasks
ShrutiMarwaha/CyTOF
Analysis of CyTOF data
ShrutiMarwaha/GastricCancerMetaAnalysis
find commmon differentially expressed genes among different gastric cancer microarray studies
ShrutiMarwaha/gtex-pipeline
GTEx Consortium data production and analysis pipelines
ShrutiMarwaha/happyCompare
Reporting toolbox for happy output
ShrutiMarwaha/Head-NeckCancer
Head&NeckCancer repository contains codes for analysis of different Head&NeckCancer datasets
ShrutiMarwaha/labs
Rmd source files for the HarvardX series PH525x
ShrutiMarwaha/MachineLearning
Machine Learning related R scripts
ShrutiMarwaha/MIMIC
Machine Learning Project to analyze data from ICU patients from MIMIC.
ShrutiMarwaha/mimic-code
MIMIC Code Repository: Code shared by the research community for the MIMIC-III database
ShrutiMarwaha/NGS_Unix
Shell scripts for different tasks for analyzing Next Generation Sequencing (NGS) data
ShrutiMarwaha/PredictSubChains
"You have a chain with links numbered through . Every minute, you draw a random link from a bag, and connect it to any other consecutivelynumbered link that you drew before.For example, if you drew , you would end up with three subchains: . You keep on drawing until you have drawn all links and connected them into a single chain of length . Let be the maximum number of subchains in this process. Find what is the mean and standard deviation of the distribution of if = 8 or 16 or 32"
ShrutiMarwaha/Python
Python Codes
ShrutiMarwaha/qPCR_Invitro_Experiment
This is an R Markdown document to analyze qPCR data from an experiment which tests if SHH can further enhance the expression of cytokines (IL-12, IL-1β, CXCL-2 and TNF) in H. pylori stimulated macrophages.
ShrutiMarwaha/qPCR_Invivo_Experiment
Analysis of qPCR Experiments: Analysis of qPCR data obtained from WT and PC-SHH-KO mice infected with Helicobacter pylori or uninfected. Two types of statistical tests are performed: Interaction plots and Two-way ANOVA.
ShrutiMarwaha/Rcodes
Miscellaneous R codes
ShrutiMarwaha/RNAseq_Analysis_Pipeline_on_AWS
This repository contains codes that perform Quality Control, Analysis of QC results, Read Mapping, Transcriptome Reconstruction, Differential Expression Analysis and Functional Analysis
ShrutiMarwaha/SQL
SQL related projects
ShrutiMarwaha/Time-Series-Data
IL-1b, IL-10 and IFNg trajectories in Helicobacter pylori infection. We extracted and analyzed time-series data for IL-10, IFNγ, IL-1β from gse37938 dataset. For a given probe, median of its expression values was calculated for each time point. The median values for both control and H.pylori infection were plotted against time to study their trajectory. Probes with two or more missing values for more than one time point, were ignored. To address the problem of probe selection, median value was taken for probes with same Genbank ID (GB_list ID ) while probes with different Genbank ID were analyzed separately.
ShrutiMarwaha/WDL
ShrutiMarwaha/Website
Shruti's personal website
ShrutiMarwaha/WorldCuisineDataAnalysis
To identify similarity and patterns among different cuisines of the world.