Pinned Repositories
SC-sample
SC-sample is a computer simulation tool for modeling spatial coalescent with recombination process, which generates ARGs directly consistent with the given sample. It attempts to uniformly select ARG from the sample-consistent ARG space. The algorithm is modified version of SC. -----------Related Publication: BMC Bioinformatics. 15:273. Link:http://www.biomedcentral.com/1471-2105/15/273
SC-Spatial_Coalescent_simulator
SC (Spatial Coalescent simulator) is a computer simulation tool for modeling spatial coalescent with recombination process. The algorithm implemented in SC is an improvement of the Wiuf and Hein algorithm (Wiuf and Hein, 1999). SC is proven to be the only precise ancestral recombination graph (ARG) simulator (Wiuf and Hein’s has some redundant and MaCS misses some information) such as the distribution of ARG generated by SC is identical to that generated by a typical back-in-time model adopted by ms. SC is developed based on Macs-0.4e, all macs options are not changed. Thanks to Gary Chen to provide support.
iMAAPs
To infer multiple-wave admixture by fitting ALD using a p-spectrum
PEAS
Package for Elementary Analysis for SNP data
The_First_Repository
Some examples about using GitHub
WinXPCNVer
WinXPCNVer is tool package for calculating the Vst values between two populations probe by probe in a sliding window, which could be used to detect highly differentiated variants between populations.
Shuhua-Fudan's Repositories
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