SichongP

Grad student at UC Davis. Study bioinformatics and equine genetics.

San Diego, California

Pinned Repositories

2020-08-03-merck-online
Data Carpentry workshop for Merck & Co., Inc.
Language:HTML0 1 00
2020-11-11-cmu-online
Language:HTML0 2 01
2020-11-16-merck
Language:HTML0 2 00
2021-03-22-genentech-online
Workshop website for March 2021 Genentech workshop
Language:HTML0 2 00
ezProtocol
A script writer for opentrons OT-2
Language:Python1 2 41
FAANG_ATACseq
ATACseq analysis pipeline for equine FAANG
Language:Jupyter Notebook0 2 00
FAANG_IsoSeq
IsoSeq pipeline used in equine FAANG project
Language:Jupyter Notebook0 2 01
FAANG_RNAseq
Transcriptomics analysis for equine FAANG
Language:Python0 2 00
NASA_APOD_WP
Set Astronomy Picture Of the Day (APOD) as wallpaper on ubuntu
Language:Python1 2 00
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Language:HTML0 1 00

SichongP's Repositories

SichongP/ezProtocol
A script writer for opentrons OT-2
Language:Python1 2 41
SichongP/NASA_APOD_WP
Set Astronomy Picture Of the Day (APOD) as wallpaper on ubuntu
Language:Python1 2 00
SichongP/2020-08-03-merck-online
Data Carpentry workshop for Merck & Co., Inc.
Language:HTML0 1 00
SichongP/2020-11-11-cmu-online
Language:HTML0 2 01
SichongP/2020-11-16-merck
Language:HTML0 2 00
SichongP/2021-03-22-genentech-online
Workshop website for March 2021 Genentech workshop
Language:HTML0 2 00
SichongP/angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
Language:HTML0 1 00
SichongP/atac-seq
Snakemake workflow for ATAC-seq analysis
Language:Jupyter Notebook0 1 11
SichongP/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
Language:Python0 1 00
SichongP/deepTools
Tools to process and analyze deep sequencing data.
Language:Python0 1 00
SichongP/FAANG_ATACseq
ATACseq analysis pipeline for equine FAANG
Language:Jupyter Notebook0 2 00
SichongP/FAANG_IsoSeq
IsoSeq pipeline used in equine FAANG project
Language:Jupyter Notebook0 2 01
SichongP/FAANG_RNAseq
Transcriptomics analysis for equine FAANG
Language:Python0 2 00
SichongP/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Language:HTML0 1 00
SichongP/embryoDog_RNAseq
Language:Shell2 0
SichongP/equineFAANGtrack
UCSC tracks for equine FAANG data
2 2
SichongP/EVA_Instrumentality
The lark's on the wing; The snail's on the thorn; God's in his heaven— All's right with the world!
Language:Python2 02
SichongP/farm-notes
notes on the farm cluster
1 0
SichongP/functional-annotation
Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
Language:Python1 0
SichongP/gffutils
GFF and GTF file manipulation and interconversion
Language:Python1 0
SichongP/openrefineder
💠 + 📚 OpenRefine on Binder!
Language:Jupyter Notebook1 0
SichongP/SalmonTools
Useful tools for working with Salmon output
Language:C++1 0
SichongP/sambamba
Tools for working with SAM/BAM/CRAM data
Language:D1 0
SichongP/scaffolds
WIP On-demand environments for learners who were unable to install software
1 01
SichongP/sichongp.github.io
Language:SCSS2 0
SichongP/SQANTI3
Repository of SQANTI3 tool for Quality Control of Long-Read Defined Transcriptomes
Language:HTML1 0
SichongP/UpSetPlot
Draw UpSet plots with Matplotlib
Language:Python1 0
SichongP/VariantFrequency
Search for variant in ENA/SRA to determine allele frequency
Language:Python2 3