SidhantPuntambekar

Hi, I'm Sidhant Puntambekar! I am a Bioinformatician at Boston Children's Hospital in Boston, MA. I like to code, play guitar and piano, and do Tae Kwon Do.

Bioinformatician @chbBoston, MA

Pinned Repositories

clustifyr-web-app
An R Shiny app to help with scRNA-seq benchmarking and analysis with clustifyr
Language:R0 1 00
eval-comm-detections-hsdn
A project to use various network community detection methods on the Human-Symptom Disease Network as created by Zhou et al. in 2014
Language:Jupyter Notebook0 0 00
Hurricane-Forecast-Data
MATLAB code I wrote to analyze HURDAT2 hurricane data sets at my internship (National Center for Atmospheric Research)
Language:MATLAB1 1 00
Portfolio-Website-New
A renovation of my original portfolio website. Contains my resume/experiences and links to my history and chess blogs.
Language:JavaScript1 1 00
Project-Euler
Project Euler is a series of math problems designed to be solved with computer science. My attempt at Project Euler is in Java
Language:Java1 2 00
rhumba
a collection of snakemake pipelines
Language:C1 1 00
rmghc-workshop-19
Rocky Mountain Genomics Hackcon Workshop 2019
Language:Nextflow1 1 00
scRNA-Reference-Matrix
Project to create a large reference matrix from all scRNA-seq datasets with metadata on NCBI GEO. Utilizes Seurat object analysis and clustifyr analysis. JSON files store relevant study information to facilitate creation of a database.
Language:R2 2 20
Sorry-Game
A rendition of the Sorry! Board Game built using JavaFX
Language:Java0 0 00
team-cyberhood-1
Cyberhood Project for HackCU VI. Keeping networks safer for everyone using a wifi sniffer program called Kismet while storing device data in a MongoDB database with analysis in MongoDB Compass.
Language:Python1 1 00

SidhantPuntambekar's Repositories

SidhantPuntambekar/scRNA-Reference-Matrix
Project to create a large reference matrix from all scRNA-seq datasets with metadata on NCBI GEO. Utilizes Seurat object analysis and clustifyr analysis. JSON files store relevant study information to facilitate creation of a database.
Language:R2 2 20
SidhantPuntambekar/Portfolio-Website
My Gatsby Portfolio Website. Contains my resume, programming projects, history and chess blog, and a description of my hobbies.
Language:JavaScript1 2 00
SidhantPuntambekar/Portfolio-Website-New
A renovation of my original portfolio website. Contains my resume/experiences and links to my history and chess blogs.
Language:JavaScript1 1 00
SidhantPuntambekar/rhumba
a collection of snakemake pipelines
Language:C1 1 00
SidhantPuntambekar/clustifyr-web-app
An R Shiny app to help with scRNA-seq benchmarking and analysis with clustifyr
Language:R0 1 00
SidhantPuntambekar/eval-comm-detections-hsdn
A project to use various network community detection methods on the Human-Symptom Disease Network as created by Zhou et al. in 2014
Language:Jupyter Notebook0 0 00
SidhantPuntambekar/Sorry-Game
A rendition of the Sorry! Board Game built using JavaFX
Language:Java0 0 00
SidhantPuntambekar/Chess-App
A full stack application to play chess or chess960 as a single player (against a chess engine) or against another human opponent. WIP
Language:Java1 0
SidhantPuntambekar/clustifyr
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
Language:R1 0
SidhantPuntambekar/clustifyrdata
Reference data for cell-type assignment with clustifyr
Language:R1 0
SidhantPuntambekar/clustifyrdatahub
External single-cell mRNA sequencing data sets for use with clustifyr
Language:R1 0
SidhantPuntambekar/CSCI-2270-Final-Project
Save the USPS by Sidhant Puntambekar and Vignesh Chandrasekhar
Language:C++2 01
SidhantPuntambekar/CSCI-3308-Lab-3
A repository to hold material for CSCI 3308 Lab 3
2 0
SidhantPuntambekar/CSCI2897
Calculating Biological Quantities - Fall 2021
Language:Jupyter Notebook1 05
SidhantPuntambekar/genMutation
A project to quantify the mutational constraint spectrum in human genomes. Data courtesy of open source genome aggregation database (gnomAD). Harvard DBMI SIBMI 2021 Project
Language:Jupyter Notebook2 0
SidhantPuntambekar/GPU-Puzzles
Solve puzzles. Learn CUDA.
Language:Jupyter Notebook0 0
SidhantPuntambekar/loftee
Language:Perl1 0
SidhantPuntambekar/movie-chooser
Language:TypeScript1 0
SidhantPuntambekar/movie-options
A program to display relevant details about any given movie. Motivated primarily for figuring out where a movie is available to watch.
1 0
SidhantPuntambekar/multithreaded-dns-resolver
A multithreaded DNS resolver written in C using synchronization mechanisms such as mutexes and semaphores
Language:C1 0
SidhantPuntambekar/National-Parks
An iOS application to track which national parks and preserves in the United States I have visited. An opportunity to refresh myself on Swift programming as well.
Language:Swift1 0
SidhantPuntambekar/Portfolio-Website-Old
Sidhant Puntambekar Portfolio Website. This repo contains all of the code for the actual website. See gatsby repo for full portfolio website. WIP
Language:JavaScript2 0
SidhantPuntambekar/Project-Rosalind
A repo to store solutions to Project Rosalind Problems. Similar to Project Euler but with Bioinformatics problems
Language:Python2 0
SidhantPuntambekar/R-Shiny-App-Practice
A repository to prepare myself for writing an R shiny app for the scRNA-seq atlas web tool
Language:R2 3
SidhantPuntambekar/ray-tracing
A small repository to learn graphics programming and ray tracing
Language:C++1 0
SidhantPuntambekar/scmetadata
Language:R0 0
SidhantPuntambekar/Seurat-Analysis-Retina-Melanoma
An analysis of scRNA-seq of retinal and melanoma cells from the NCBI Gene Expression Omnibus Database
Language:R2 0
SidhantPuntambekar/Seurat-Tutorial-2700-PBMCs
Code for Seurat Tutorial for Guided Clustering using PBMC cells
Language:R2 01
SidhantPuntambekar/SidhantPuntambekar
A description of myself as a programmer and person
1 0
SidhantPuntambekar/stonkview
CSCI 3308 Group Project Repo for hosting on Heroku
Language:EJS2 0