simple-stitcher
Stitches image tiles together that have been acquired using MicroManager multidimensional acquisition.
Requirements
Install requirements by creating a conda environment:
conda create --name <env> --file conda_requirements.txt
Afterwards, install addditional pacakages with pip (after you've activated the conda environment)
pip install -r requirements.txt
Usage
The .pos file generated by MicroManager should be in the same folder as the images that you want to stitch. The Stitcher object expects the filepath of the .pos file during initialisation.
# Specify file location
filepath = 'path/to/PositionList.pos'
# Create Stitcher object
s = Stitcher(position_list_filename)
# Stitch and save
s.stitch()
s.save('stitched.png') This will save the stitched image in the same directory as the original images.
To do
As of now, overlap between tile images is not accounted for.