Pinned Repositories
Bias-estimating-life-expectancy-Morquio
Bias for estimating life expectancy from age at death: A simulation approach applied to Morquio Syndrome A
CDGnet
Repository for code related to the CDGnet tool for prioritizing targeted cancer therapies
cdgnet-package
CDGnet package for shiny app
DMD-mdx-pred-metabolomics
Code for analysis of metabolomics data for DMD mdx mouse model
DMD-metabolomics
Code for analysis of metabolomics data for DMD natural history study
Fdr-regression
Code for "A direct approach to estimating false discovery rates conditional on covariates" by SM Boca and JT Leek
Mentoring
Various tips and tools for students
MultiMed
Package which provides methods for testing multiple mediators simultaneously, also on Bioconductor
Presentations
Talks, posters, workshops
SiminaB.github.io
Repository for blog posts
SiminaB's Repositories
SiminaB/Mentoring
Various tips and tools for students
SiminaB/MultiMed
Package which provides methods for testing multiple mediators simultaneously, also on Bioconductor
SiminaB/Fdr-regression
Code for "A direct approach to estimating false discovery rates conditional on covariates" by SM Boca and JT Leek
SiminaB/CDGnet
Repository for code related to the CDGnet tool for prioritizing targeted cancer therapies
SiminaB/DMD-metabolomics
Code for analysis of metabolomics data for DMD natural history study
SiminaB/Presentations
Talks, posters, workshops
SiminaB/DMD-mdx-pred-metabolomics
Code for analysis of metabolomics data for DMD mdx mouse model
SiminaB/SiminaB.github.io
Repository for blog posts
SiminaB/Bias-estimating-life-expectancy-Morquio
Bias for estimating life expectancy from age at death: A simulation approach applied to Morquio Syndrome A
SiminaB/cdgnet-package
CDGnet package for shiny app
SiminaB/covid19-review
A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19
SiminaB/deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
SiminaB/ER-breast-cancer-resistance
Data from Shajahan-Haq et 2017 Oncotarget paper
SiminaB/Heterozygosity-and-admixture
Code for article "On the heterozygosity of an admixed population"
SiminaB/nfpmShinyComponent
This package provides an API for interactive network visualization of gene-drug and gene-gene interactions.
SiminaB/popadmix-app
For summer intern
SiminaB/popadmix-pkg
A package to calculate heterozygosity, Fst and make plots about them.
SiminaB/R_example_code
Various examples of R code, R markdown code etc
SiminaB/swfdr
Science-wise false discovery rate package
SiminaB/BioC2020
BioC2020: Where Software and Biology Connect
SiminaB/Bioconductor2021
SiminaB/Consistency_prot
SiminaB/FDA-approved-Targeted-Therapies-Label-Extraction
Extract FDA approved target therapy and related gene, protein, disease, and medication labels from HTML
SiminaB/github-slideshow
A robot powered training repository :robot:
SiminaB/hello-world
Doing this for practice!
SiminaB/markdown-portfolio
SiminaB/Perspective-on-prediction
SiminaB/plot_words_Europe_map
SiminaB/qc-reports
QC reporting infrastructure for the CPTAC3 CDAP
SiminaB/Spoon-Knife
This repo is for demonstration purposes only.