Pinned Repositories
Bioc2017
Bioc2018_Workshop
BiocWorkshops
Workshops for learning Bioconductor
funcivar
motifBreakR
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
StateHub
A repository for storing chromatin state definition tables to paint the genome with functional annotation
StatePaintR
Simon-Coetzee's Repositories
Simon-Coetzee/motifBreakR
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
Simon-Coetzee/StatePaintR
Simon-Coetzee/StateHub
A repository for storing chromatin state definition tables to paint the genome with functional annotation
Simon-Coetzee/Bioc2017
Simon-Coetzee/funcivar
Simon-Coetzee/Bioc2018_Workshop
Simon-Coetzee/BiocWorkshops
Workshops for learning Bioconductor
Simon-Coetzee/cedarsbioGitHW
A homework folder for Cedars compbio students
Simon-Coetzee/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
Simon-Coetzee/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
Simon-Coetzee/deepTools
Tools to process and analyze deep sequencing data.
Simon-Coetzee/dotfiles-for-lab
Simon-Coetzee/ELMER
Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target genes
Simon-Coetzee/hgg_2020
Course materials for the Human Genetics and Genomics bioinformatics course, Spring 2020
Simon-Coetzee/idr
IDR
Simon-Coetzee/marx
The classless CSS reset (perfect for Communists).
Simon-Coetzee/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Simon-Coetzee/NucleoATACR
R package for reading in & working with NucleoATAC outputs
Simon-Coetzee/phaser
phasing and Allele Specific Expression from RNA-seq
Simon-Coetzee/seurat-wrappers
Community-provided extensions to Seurat
Simon-Coetzee/sircel
Identify cell barcodes from single-cell genomics sequencing experiments
Simon-Coetzee/statehubweb
Simon-Coetzee/umis
Tools for processing UMI RNA-tag data
Simon-Coetzee/workflows
Community maintained workflows & tools (with examples)