Simontuk

academic-kickstart

📝 Easily create a beautiful website using Academic, Hugo, and Netlify

arules

Mining Association Rules and Frequent Itemsets with R

badger

Bayesian approach for detecting copy number alterations from single cell RNA-seq data

dotfiles

my own dotfile backup

dotfiles-1

A set of vim, zsh, git, and tmux configuration files.

dotpandoc

Pandoc Data directory, including filters and templates for producing multiple outputs for academic content.

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

Simontuk/academic-kickstart

📝 Easily create a beautiful website using Academic, Hugo, and Netlify

Simontuk/arules

Mining Association Rules and Frequent Itemsets with R

Simontuk/badger

Bayesian approach for detecting copy number alterations from single cell RNA-seq data

Simontuk/dotfiles

my own dotfile backup

Simontuk/dotfiles-1

A set of vim, zsh, git, and tmux configuration files.

Simontuk/dotpandoc

Pandoc Data directory, including filters and templates for producing multiple outputs for academic content.

Simontuk/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

Simontuk/easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

Simontuk/hdlatex

Heidelberg MoBi Latex repro

Simontuk/hello_world

First GitHub repo

Simontuk/linter-lintr

Lint R on the fly, using lintr

Simontuk/miloR

R package implementation of Milo for testing for differential abundance in KNN graphs

Simontuk/pagoda2

Simontuk/prezto

The configuration framework for Zsh

Simontuk/pyscenic

Simontuk/rna_seq

RNA-Seq and Cell cycle annotation

Simontuk/Rtsne.multicore

R wrapper for Multicore t-SNE

Simontuk/scde_SAS

R package for analyzing single-cell RNA-seq data

Simontuk/SIMLR

Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch), implementations of the method published in http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.4207.html. Also see http://biorxiv.org/content/early/2017/03/21/118901 for a description of the software.

Simontuk/Simontuk_Website

Simontuk/singularity-r

R in a Singularity container

Simontuk/singularity-rstudio

RStudio Server in a Singularity container

Simontuk/singularity-rstudio-bio

Rstudio Container based on CentOS R including a core set of important R packages in the "/library" directory of the container

Simontuk/smrnaseq

A small-RNA sequencing analysis pipeline

Simontuk/splatter

Simple simulation of single-cell RNA sequencing data

Simontuk/sprint_covseq

Covseq-pipe nextflow

Simontuk/swirl_courses

A collection of interactive courses for the swirl R package.

Simontuk/turbo-pancake

Simontuk/velocyto.R

RNA velocity estimation in R

Simontuk/Wflow-Test