huge thanks to d8vela / pymol_scripts
ln -s ~/scripts/python_scripts/pymol_scripts/pymolrc .pymolrc
alias pymol="/Applications/MacPyMOL.app/Contents/MacOS/MacPyMOL $1" alias bam='pymol -d bam'
add new pml scripts to pymolrc lines add python scripts into pymol_scripts followed by reference in --init--pymol doc