/SCAP

Single Cell Analysis Portal

Primary LanguageR

SCAP

Docker dev container

An Rshiny portal for analysis of scRNA-seq data

Updates & NEWS

For all recent updates and new features, check our NEWS.

Setup

install.packages("devtools")
devtools::install_github("JoelPHoward/SCAP")

Running the app

SCAP::SCAP()

Uploading your data

Currently SCAP can only process Seurat objects. For better performance, especially with large datasets, the .rds files are first converted to .loom.

  • Navitgate to the File Conversion tab.
  • Select the Seurat object you wish to analyze and the folder where you want to save the .loom file(s) (note, initially this folder should be empty, such that only the .loom files will be present in the folder).
  • Click Convert.

When the conversion is complete, navigate back to the main tab and upload your data.