Single-Cell-Genomics-Group-CNAG-CRG/Tumor-Immune-Cell-Atlas

TICAtlas.h5ad cell type metadata contains only integers

adamgayoso opened this issue · 3 comments

adamgayoso commented

Would it be possible to upload the anndata with the correct string cell type values?

Thanks!

PaulaNietoG commented

Hello, thanks for pointing this out! I believe this has to do with how scanpy reads h5ad files (more specifically, factors), as this doesn't happen with Seurat. I will try to convert all metadata factor variables to strings/characters and will ket you know so you can download the file again.

PaulaNietoG commented

Maybe in the meantime you could do this someone sent me:

Screenshot 2020-11-09 at 11 57 46

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PaulaNietoG commented

This should be fixed now.