SlicerDMRI

Brain white matter mapping: SlicerDMRI tractography in 3D Slicer, whitematteranalysis anatomical tract parcellation, and new deep learning methods

Pinned Repositories

ConnPrediction
Language:Python3 1 00
DDMReg
Deep Diffusion MRI Registration (DDMReg)
Language:Python5 1 02
DeepWMA
Deep White Matter Analysis
Language:Python3 1 01
DFC
"DFC: Anatomically Informed Fiber Clustering with Self-supervised Deep Learning for Fast and Effective Tractography Parcellation".
Language:Python18 7 22
ORG-Atlases
ORG Fiber Clustering White Matter Atlas
26 5 46
SlicerDcm2nii
Support loading DICOM data in Slicer using the functionality of the dcm2niix program.
Language:Python4 6 53
SlicerDMRI
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
Language:C++77 7 9227
SupWMA
[MedIA 2023] "Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populations and dMRI Acquisitions", Medical Image Analysis
Language:Python22 9 56
TractCloud
[MICCAI 2023] TractCloud: Registration-free tractography parcellation with a novel local-global streamline point cloud representation
Language:Python7 7 03
whitematteranalysis
White matter tractography clustering and more...
Language:Python69 7 7934

SlicerDMRI's Repositories

SlicerDMRI/SlicerDMRI
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
Language:C++77 7 9227
SlicerDMRI/whitematteranalysis
White matter tractography clustering and more...
Language:Python69 7 7934
SlicerDMRI/ORG-Atlases
ORG Fiber Clustering White Matter Atlas
26 5 46
SlicerDMRI/SupWMA
[MedIA 2023] "Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populations and dMRI Acquisitions", Medical Image Analysis
Language:Python22 9 56
SlicerDMRI/DFC
"DFC: Anatomically Informed Fiber Clustering with Self-supervised Deep Learning for Fast and Effective Tractography Parcellation".
Language:Python18 7 22
SlicerDMRI/TractCloud
[MICCAI 2023] TractCloud: Registration-free tractography parcellation with a novel local-global streamline point cloud representation
Language:Python7 7 03
SlicerDMRI/DDMReg
Deep Diffusion MRI Registration (DDMReg)
Language:Python5 1 02
SlicerDMRI/SlicerDcm2nii
Support loading DICOM data in Slicer using the functionality of the dcm2niix program.
Language:Python4 6 53
SlicerDMRI/ConnPrediction
Language:Python3 1 00
SlicerDMRI/DeepWMA
Deep White Matter Analysis
Language:Python3 1 01
SlicerDMRI/Slicer
Multi-platform, free open source software for visualization and image computing.
Language:C++1 3 01
SlicerDMRI/SlicerTractParcellation
Automatic parcellation of white matter tractography using WMA method and ORG atlas
Language:Python1 6 02
SlicerDMRI/SupWMA-TrainingData
1
SlicerDMRI/tutorials
SlicerDMRI tutorial repository
Language:HTML1 3 11
SlicerDMRI/Sandbox
New modules created for diffusion MRI tasks in 3D Slicer
Language:C++0 5 34
SlicerDMRI/bib-publication-list
Interactive publications lists with JavaScript + Bibtex
Language:JavaScript3 0
SlicerDMRI/DCMTK
WARNING: This is NOT the official upstream DCMTK git repository.
3 0
SlicerDMRI/DeepMSP
Official PyTorch implementation of DeepMSP (Deep Multimodal Saliency Parcellation)
Language:Python8 0
SlicerDMRI/DMRITestData
2 0
SlicerDMRI/SDPY
Language:CMake3 0
SlicerDMRI/SlicerDMRI-data
3 01
SlicerDMRI/SlicerDMRI-Snapshots
3 0
SlicerDMRI/slicerdmri.github.io
SlicerDMRI organization website repository
Language:TeX5 63
SlicerDMRI/SlicerWMA
Extension for 3D slicer that provides a module and a python package for fiber clustering and tractography analysis.
Language:Python3 33
SlicerDMRI/TractoSCR
SlicerDMRI/TractShapeNet
SlicerDMRI/ukftractography
Language:C3 0
SlicerDMRI/wmap
White Matter Analysis Pipeline (WMAP)
Language:Python5 0