Smediterranea

Smediterranea's Stars

• SinghLabUCSF/Diapause-multiomics

  The repository for code and data analysis pipeline for multi-omics (ATAC-seq, RNA-seq, lipidomics, genomes) integration and analysis for diapause evolution.

  Language:Perl23

• seqscope/STtools

  Language:R102

• aristoteleo/spateo-viewer

  Web application demonstrating 3D modeling of spatial transcriptomics

  Language:Python154

• cooplab/popgen-notes

  Population genetics notes

  Language:PostScript658129

• sib-swiss/training-collection

  Collection of bioinformatics training materials

  Language:Python989183

• Webb-Laboratory/Hajdarovic_And_Yu_et_al_2022

  single cell analysis of the aging female hypothalamus

  Language:Jupyter Notebook72

• Smediterranea/COPILOT

  Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.

  1

• crazyhottommy/getting-started-with-genomics-tools-and-resources

  Unix, R and python tools for genomics and data science

  Language:Shell1.2k351

• rpolicastro/scProportionTest

  Language:R617

• phasegenomics/juicebox_scripts

  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats

  Language:Python6510

• rajewsky-lab/planarian_lineages

  Language:Jupyter Notebook257

• BGI-shenzhen/PopLDdecay

  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

  Language:C++18855