Singularity availability on LSF

[concatenize]

I work on a cluster where I need to do module load singularity to add singularity to the path. I must do this within every new job, not once at the start -- module load singularity && bsub "singularity" fails. Based on my experience with a solution similar to what you have here, I suspect that this setup won't allow --use-singularity. I predict it will fail with the same sort of error, which will manifest like this:

Building DAG of jobs...
WorkflowError:
The singularity command has to be available in order to use singularity integration. 

My current workaround is to do load module singularity as a prefix to the variable you call jobscript in the wrapper (line 98 of lsf-submit.py).

[concatenize]

Actually, I was totally wrong. I can load singularity once at the start of my session and use it everywhere "downstream".